Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Barnyard | Genbank acc : NC_004689 | Aclame index mge :147

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 109

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	21	lcl\|Aclame:protein:vir:7444\|NCBI_annot:gp21\|genbank:acc:NP_818559;genbank:gi:29566996;genbank:GeneID	HHsearch (proba=96.86%)
Portal	7	lcl\|Aclame:protein:vir:7430\|NCBI_annot:gp7\|genbank:acc:NP_818545;genbank:gi:29566982;genbank:GeneID:	HHsearch (proba=100.00%)
TermL	6	lcl\|Aclame:protein:vir:7429\|NCBI_annot:gp6\|genbank:acc:NP_818544;genbank:gi:29566981;genbank:GeneID:	Blast (e-value=0)
MTP	30	lcl\|Aclame:protein:vir:7453\|NCBI_annot:gp30\|genbank:acc:NP_818568;genbank:gi:29567005;genbank:GeneID	Blast (e-value=1e-164)
Sheath	NOT FOUND
Ad1	23	lcl\|Aclame:protein:vir:7446\|NCBI_annot:gp23\|genbank:acc:NP_818561;genbank:gi:29566998;genbank:GeneID	HHsearch (proba=100.00%)
Hc1	24	lcl\|Aclame:protein:vir:7447\|NCBI_annot:gp24\|genbank:acc:NP_818562;genbank:gi:29566999;genbank:GeneID	HHsearch (proba=100.00%)
Ne1	26	lcl\|Aclame:protein:vir:7449\|NCBI_annot:gp26\|genbank:acc:NP_818564;genbank:gi:29567001;genbank:GeneID	HHsearch (proba=100.00%)
Tc1	27	lcl\|Aclame:protein:vir:7450\|NCBI_annot:gp27\|genbank:acc:NP_818565;genbank:gi:29567002;genbank:GeneID	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:101607 protein:vir:1886 protein:vir:191	11b HK022 HK97	9 % 10 % 10 %
Portal	protein:vir:7430 protein:vir:102239 protein:vir:101494	Barnyard PBI1 PLot	100 % 35 % 34 %
TermL	protein:vir:7429 protein:vir:102238 protein:vir:101493	Barnyard PBI1 PLot	100 % 45 % 44 %
MTP	protein:vir:7453 protein:vir:102193 protein:vir:101512	Barnyard PBI1 PLot	100 % 52 % 52 %
Ad1	protein:vir:7446 protein:vir:102188 protein:vir:101506	Barnyard PBI1 PLot	100 % 34 % 34 %
Hc1	protein:vir:7447 protein:vir:102189 protein:vir:101507	Barnyard PBI1 PLot	100 % 36 % 36 %
Ne1	protein:vir:7449 protein:vir:102190 protein:vir:101508	Barnyard PBI1 PLot	100 % 47 % 43 %
Tc1	protein:vir:7450 protein:vir:102191 protein:vir:101509	Barnyard PBI1 PLot	100 % 36 % 35 %