Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 11b | Genbank acc : NC_006356 | Aclame index mge :1646

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 65

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	21	lcl\|Aclame:protein:vir:101607\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	16	lcl\|Aclame:protein:vir:101647\|NCBI_annot:phage	HHsearch (proba=100.00%)
TermL	15	lcl\|Aclame:protein:vir:101640\|NCBI_annot:terminase	Blast (e-value=0)
MTP	36	lcl\|Aclame:protein:vir:101621\|NCBI_annot:hypothetical	Blast (e-value=4e-82)
Sheath	NOT FOUND
Ad1	28	lcl\|Aclame:protein:vir:101599\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	29	lcl\|Aclame:protein:vir:101608\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	34	lcl\|Aclame:protein:vir:101594\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	35	lcl\|Aclame:protein:vir:101606\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Tc1<->Hc1	6	3
Ne1<->Hc1	5	2
Tc1<->Ad1	7	4
Ne1<->Ad1	6	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:101607 protein:vir:100135 protein:vir:1886	11b phi1026b HK022	100 % 20 % 19 %
Portal	protein:vir:101647 protein:vir:104259 protein:vir:1266	11b T5 phi-105	100 % 18 % 18 %
TermL	protein:vir:101640 protein:vir:99572 protein:vir:78394	11b BcepF1 SETP3	100 % 19 % 18 %
MTP	protein:vir:101621 protein:vir:9881 protein:vir:100241	11b 315.5 Bcep176	100 % 23 % 16 %
Ad1	protein:vir:101599 protein:vir:4512 protein:vir:4458	11b V ST64B	100 % 26 % 22 %
Hc1	protein:vir:101608 protein:vir:81177 protein:vir:100134	11b Geobacillus virus E2 phi1026b	100 % 17 % 16 %
Ne1	protein:vir:101594 protein:vir:3617 protein:vir:94654	11b TP901-1 mu1/6	100 % 29 % 27 %
Tc1	protein:vir:101606 protein:vir:3972 protein:vir:3618	11b ul36 TP901-1	100 % 24 % 24 %