Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Wildcat | Genbank acc : NC_008206 | Aclame index mge :1671

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 148

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	30	lcl\|Aclame:protein:vir:99075\|NCBI_annot:gp30\|genbank:acc:YP_655895;genbank:gi:109521467;genbank:Gene	HHsearch (proba=100.00%)
Portal	27	lcl\|Aclame:protein:vir:99072\|NCBI_annot:gp27\|genbank:acc:YP_655892;genbank:gi:109521464;genbank:Gene	HHsearch (proba=100.00%)
TermL	26	lcl\|Aclame:protein:vir:99071\|NCBI_annot:gp26\|genbank:acc:YP_655891;genbank:gi:109521463;genbank:Gene	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	31	lcl\|Aclame:protein:vir:99002\|NCBI_annot:gp31\|genbank:acc:YP_655896;genbank:gi:109521468;genbank:Gene	HHsearch (proba=100.00%)
Hc1	32	lcl\|Aclame:protein:vir:99003\|NCBI_annot:gp32\|genbank:acc:YP_655897;genbank:gi:109521469;genbank:Gene	HHsearch (proba=100.00%)
Ne1	33	lcl\|Aclame:protein:vir:99004\|NCBI_annot:gp33\|genbank:acc:YP_655898;genbank:gi:109521470;genbank:Gene	HHsearch (proba=100.00%)
Tc1	34	lcl\|Aclame:protein:vir:99005\|NCBI_annot:gp34\|genbank:acc:YP_655899;genbank:gi:109521471;genbank:Gene	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:99075 protein:vir:96833 protein:vir:102605	Wildcat EW Llij	100 % 17 % 17 %
Portal	protein:vir:99072 protein:vir:2500 protein:vir:104082	Wildcat TM4 Che12	100 % 25 % 16 %
TermL	protein:vir:99071 protein:vir:8098 protein:vir:80678	Wildcat Che9c PA6	100 % 26 % 26 %
Ad1	protein:vir:99002 protein:vir:98481 protein:vir:1640	Wildcat VWB r1t	100 % 24 % 21 %
Hc1	protein:vir:99003	Wildcat	100 %
Ne1	protein:vir:99004	Wildcat	100 %
Tc1	protein:vir:99005 protein:vir:98426 protein:vir:7777	Wildcat VWB Bxz2	100 % 20 % 18 %