Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 6 lcl|Aclame:protein:vir:96262|NCBI_annot:ORF013|genbank:acc:YP_240311;genbank:gi:66395978;genbank:Gen HHsearch (proba=100.00%)
Portal 3 lcl|Aclame:protein:vir:96266|NCBI_annot:ORF007|genbank:acc:YP_240308;genbank:gi:66395972;genbank:Gen HHsearch (proba=100.00%)
TermL 2 lcl|Aclame:protein:vir:96300|NCBI_annot:ORF008|genbank:acc:YP_240307;genbank:gi:66395973;genbank:Gen Blast (e-value=0)
MTP 13 lcl|Aclame:protein:vir:96311|NCBI_annot:ORF021|genbank:acc:YP_240318;genbank:gi:66395985;genbank:Gen Blast (e-value=1e-108)
Sheath NOT FOUND
Ad1 8 lcl|Aclame:protein:vir:96281|NCBI_annot:ORF047|genbank:acc:YP_240313;genbank:gi:66396008;genbank:Gen HHsearch (proba=100.00%)
Hc1 9 lcl|Aclame:protein:vir:96294|NCBI_annot:ORF043|genbank:acc:YP_240314;genbank:gi:66396005;genbank:Gen HHsearch (proba=100.00%)
Ne1 10 lcl|Aclame:protein:vir:96288|NCBI_annot:ORF049|genbank:acc:YP_240315;genbank:gi:66396010;genbank:Gen HHsearch (proba=100.00%)
Tc1 12 lcl|Aclame:protein:vir:96260|NCBI_annot:ORF027|genbank:acc:YP_240317;genbank:gi:66395991;genbank:Gen HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:96262
protein:vir:95898
protein:vir:1239
ROSA
71
phi ETA
100 %
100 %
91 %
Portal protein:vir:96266
protein:vir:95899
protein:vir:97447
ROSA
71
92
100 %
100 %
79 %
TermL protein:vir:96300
protein:vir:95890
protein:vir:97448
ROSA
71
92
100 %
99 %
96 %
MTP protein:vir:96311
protein:vir:105912
protein:vir:94128
ROSA
phiETA3
96
100 %
100 %
100 %
Ad1 protein:vir:96281
protein:vir:95891
protein:vir:93740
ROSA
71
55
100 %
100 %
98 %
Hc1 protein:vir:96294
protein:vir:105908
protein:vir:94092
ROSA
phiETA3
96
100 %
100 %
97 %
Ne1 protein:vir:96288
protein:vir:105916
protein:vir:94108
ROSA
phiETA3
96
100 %
89 %
88 %
Tc1 protein:vir:96260
protein:vir:105892
protein:vir:94096
ROSA
phiETA3
96
100 %
100 %
100 %