Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : ROSA | Genbank acc : NC_007058 | Aclame index mge :1612

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 74

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|Aclame:protein:vir:96262\|NCBI_annot:ORF013\|genbank:acc:YP_240311;genbank:gi:66395978;genbank:Gen	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:96266\|NCBI_annot:ORF007\|genbank:acc:YP_240308;genbank:gi:66395972;genbank:Gen	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:96300\|NCBI_annot:ORF008\|genbank:acc:YP_240307;genbank:gi:66395973;genbank:Gen	Blast (e-value=0)
MTP	13	lcl\|Aclame:protein:vir:96311\|NCBI_annot:ORF021\|genbank:acc:YP_240318;genbank:gi:66395985;genbank:Gen	Blast (e-value=1e-108)
Sheath	NOT FOUND
Ad1	8	lcl\|Aclame:protein:vir:96281\|NCBI_annot:ORF047\|genbank:acc:YP_240313;genbank:gi:66396008;genbank:Gen	HHsearch (proba=100.00%)
Hc1	9	lcl\|Aclame:protein:vir:96294\|NCBI_annot:ORF043\|genbank:acc:YP_240314;genbank:gi:66396005;genbank:Gen	HHsearch (proba=100.00%)
Ne1	10	lcl\|Aclame:protein:vir:96288\|NCBI_annot:ORF049\|genbank:acc:YP_240315;genbank:gi:66396010;genbank:Gen	HHsearch (proba=100.00%)
Tc1	12	lcl\|Aclame:protein:vir:96260\|NCBI_annot:ORF027\|genbank:acc:YP_240317;genbank:gi:66395991;genbank:Gen	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:96262 protein:vir:95898 protein:vir:1239	ROSA 71 phi ETA	100 % 100 % 91 %
Portal	protein:vir:96266 protein:vir:95899 protein:vir:97447	ROSA 71 92	100 % 100 % 79 %
TermL	protein:vir:96300 protein:vir:95890 protein:vir:97448	ROSA 71 92	100 % 99 % 96 %
MTP	protein:vir:96311 protein:vir:105912 protein:vir:94128	ROSA phiETA3 96	100 % 100 % 100 %
Ad1	protein:vir:96281 protein:vir:95891 protein:vir:93740	ROSA 71 55	100 % 100 % 98 %
Hc1	protein:vir:96294 protein:vir:105908 protein:vir:94092	ROSA phiETA3 96	100 % 100 % 97 %
Ne1	protein:vir:96288 protein:vir:105916 protein:vir:94108	ROSA phiETA3 96	100 % 89 % 88 %
Tc1	protein:vir:96260 protein:vir:105892 protein:vir:94096	ROSA phiETA3 96	100 % 100 % 100 %