Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 36 lcl|Aclame:protein:vir:3613|NCBI_annot:MHP|genbank:acc:NP_112699;genbank:gi:13786567;genbank:GeneID: HHsearch (proba=100.00%)
Portal 32 lcl|Aclame:protein:vir:3609|NCBI_annot:ORF32|genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneI HHsearch (proba=100.00%)
TermL 31 lcl|Aclame:protein:vir:3608|NCBI_annot:TerL|genbank:acc:NP_112694;genbank:gi:13786562;genbank:GeneID Blast (e-value=0)
MTP 42 lcl|Aclame:protein:vir:3619|NCBI_annot:MTP|genbank:acc:NP_112705;genbank:gi:13786573;genbank:GeneID: Blast (e-value=4e-97)
Sheath NOT FOUND
Ad1 38 lcl|Aclame:protein:vir:3615|NCBI_annot:ORF38|genbank:acc:NP_112701;genbank:gi:13786569;genbank:GeneI HHsearch (proba=100.00%)
Hc1 39 lcl|Aclame:protein:vir:3616|NCBI_annot:ORF39|genbank:acc:NP_112702;genbank:gi:13786570;genbank:GeneI HHsearch (proba=100.00%)
Ne1 40 lcl|Aclame:protein:vir:3617|NCBI_annot:ORF40|genbank:acc:NP_112703;genbank:gi:13786571;genbank:GeneI HHsearch (proba=100.00%)
Tc1 41 lcl|Aclame:protein:vir:3618|NCBI_annot:ORF41|genbank:acc:NP_112704;genbank:gi:13786572;genbank:GeneI HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:3613
protein:vir:739
protein:vir:105334
TP901-1
Tuc2009
PH15
100 %
94 %
51 %
Portal protein:vir:3609
protein:vir:3964
protein:vir:733
TP901-1
ul36
Tuc2009
100 %
89 %
68 %
TermL protein:vir:3608
protein:vir:3963
protein:vir:732
TP901-1
ul36
Tuc2009
100 %
97 %
96 %
MTP protein:vir:3619
protein:vir:3973
protein:vir:745
TP901-1
ul36
Tuc2009
100 %
90 %
90 %
Ad1 protein:vir:3615
protein:vir:3970
protein:vir:741
TP901-1
ul36
Tuc2009
100 %
95 %
91 %
Hc1 protein:vir:3616
protein:vir:742
protein:vir:3971
TP901-1
Tuc2009
ul36
100 %
93 %
92 %
Ne1 protein:vir:3617
protein:vir:743
protein:vir:98409
TP901-1
Tuc2009
ul36
100 %
67 %
61 %
Tc1 protein:vir:3618
protein:vir:744
protein:vir:3972
TP901-1
Tuc2009
ul36
100 %
99 %
95 %