Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : TP901-1 | Genbank acc : NC_002747 | Aclame index mge :74

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 56

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	36	lcl\|Aclame:protein:vir:3613\|NCBI_annot:MHP\|genbank:acc:NP_112699;genbank:gi:13786567;genbank:GeneID:	HHsearch (proba=100.00%)
Portal	32	lcl\|Aclame:protein:vir:3609\|NCBI_annot:ORF32\|genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneI	HHsearch (proba=100.00%)
TermL	31	lcl\|Aclame:protein:vir:3608\|NCBI_annot:TerL\|genbank:acc:NP_112694;genbank:gi:13786562;genbank:GeneID	Blast (e-value=0)
MTP	42	lcl\|Aclame:protein:vir:3619\|NCBI_annot:MTP\|genbank:acc:NP_112705;genbank:gi:13786573;genbank:GeneID:	Blast (e-value=4e-97)
Sheath	NOT FOUND
Ad1	38	lcl\|Aclame:protein:vir:3615\|NCBI_annot:ORF38\|genbank:acc:NP_112701;genbank:gi:13786569;genbank:GeneI	HHsearch (proba=100.00%)
Hc1	39	lcl\|Aclame:protein:vir:3616\|NCBI_annot:ORF39\|genbank:acc:NP_112702;genbank:gi:13786570;genbank:GeneI	HHsearch (proba=100.00%)
Ne1	40	lcl\|Aclame:protein:vir:3617\|NCBI_annot:ORF40\|genbank:acc:NP_112703;genbank:gi:13786571;genbank:GeneI	HHsearch (proba=100.00%)
Tc1	41	lcl\|Aclame:protein:vir:3618\|NCBI_annot:ORF41\|genbank:acc:NP_112704;genbank:gi:13786572;genbank:GeneI	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:3613 protein:vir:739 protein:vir:105334	TP901-1 Tuc2009 PH15	100 % 94 % 51 %
Portal	protein:vir:3609 protein:vir:3964 protein:vir:733	TP901-1 ul36 Tuc2009	100 % 89 % 68 %
TermL	protein:vir:3608 protein:vir:3963 protein:vir:732	TP901-1 ul36 Tuc2009	100 % 97 % 96 %
MTP	protein:vir:3619 protein:vir:3973 protein:vir:745	TP901-1 ul36 Tuc2009	100 % 90 % 90 %
Ad1	protein:vir:3615 protein:vir:3970 protein:vir:741	TP901-1 ul36 Tuc2009	100 % 95 % 91 %
Hc1	protein:vir:3616 protein:vir:742 protein:vir:3971	TP901-1 Tuc2009 ul36	100 % 93 % 92 %
Ne1	protein:vir:3617 protein:vir:743 protein:vir:98409	TP901-1 Tuc2009 ul36	100 % 67 % 61 %
Tc1	protein:vir:3618 protein:vir:744 protein:vir:3972	TP901-1 Tuc2009 ul36	100 % 99 % 95 %