Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 7-7-1 | Genbank acc : NC_019519

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 8) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 127

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	113	lcl\|NC_019519.1_cdsid_YP_007006569.1	HHsearch (proba=100.00%)
Portal	112	lcl\|NC_019519.1_cdsid_YP_007006568.1	HHsearch (proba=100.00%)
TermL	111	lcl\|NC_019519.1_cdsid_YP_007006567.1	Blast (e-value=4e-43)
MTP	NOT FOUND
Sheath	126	lcl\|NC_019519.1_cdsid_YP_007006582.1	HHsearch (proba=100.00%)
Ad1	119	lcl\|NC_019519.1_cdsid_YP_007006575.1	HHsearch (proba=86.67%)
Hc1	121	lcl\|NC_019519.1_cdsid_YP_007006577.1	HHsearch (proba=96.12%)
Ne1	123	lcl\|NC_019519.1_cdsid_YP_007006579.1	HHsearch (proba=95.55%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:93616 protein:vir:96762 protein:vir:8324	phi 4795 VP882 Corndog	24 % 11 % 10 %
Portal	protein:vir:80134 protein:vir:95378 protein:vir:102080	bacteriophage bv1 GBSV1 Fah	17 % 17 % 17 %
TermL	protein:vir:105705 protein:vir:96782 protein:vir:96147	ES18 phiHSIC 37	29 % 27 % 27 %
Sheath	protein:vir:4463 protein:vir:4517 protein:vir:489	ST64B V P27	22 % 21 % 21 %
Ad1	protein:vir:80320 protein:vir:1435 protein:vir:486	phi644-2 phiE125 P27	15 % 15 % 20 %
Hc1	protein:vir:1272 protein:vir:102144 protein:vir:81177	phi-105 phiSM101 Geobacillus virus E2	16 % 17 % 19 %
Ne1	protein:vir:1988 protein:vir:4906 protein:vir:2740	Mu Sfi11 O1205	16 % 23 % 23 %