Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : VP882 | Genbank acc : NC_009016 | Aclame index mge :1628

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 6) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 71

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|Aclame:protein:vir:96762\|NCBI_annot:putative	HHsearch (proba=100.00%)
Portal	6	lcl\|Aclame:protein:vir:96738\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	4	lcl\|Aclame:protein:vir:96700\|NCBI_annot:putative	Blast (e-value=0)
MTP	29	lcl\|Aclame:protein:vir:96741\|NCBI_annot:putative	Blast (e-value=4e-96)
Sheath	28	lcl\|Aclame:protein:vir:96740\|NCBI_annot:phage	HHsearch (proba=100.00%)
Ad1	5	lcl\|Aclame:protein:vir:96750\|NCBI_annot:putative	HHsearch (proba=100.00%)
Hc1	11	lcl\|Aclame:protein:vir:96756\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	13	lcl\|Aclame:protein:vir:96763\|NCBI_annot:putative	HHsearch (proba=100.00%)
Tc1	14	lcl\|Aclame:protein:vir:96764\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad1<->Hc1	6	2
Tc1<->Hc1	3	2
Tc1<->Ad1	9	4
Ne1<->Ad1	8	4

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:96762 protein:vir:80376 protein:vir:105038	VP882 phi644-2 phiKO2	100 % 22 % 21 %
Portal	protein:vir:96738 protein:vir:79538 protein:vir:10321	VP882 cdtI VHML	100 % 22 % 20 %
TermL	protein:vir:96700 protein:vir:79539 protein:vir:6384	VP882 cdtI BcepNazgul	100 % 21 % 21 %
MTP	protein:vir:96741 protein:vir:100324 protein:vir:1846	VP882 phi-MhaA1-PHL101 186	100 % 30 % 26 %
Sheath	protein:vir:96740 protein:vir:10336 protein:vir:79181	VP882 VHML phiE202	100 % 30 % 25 %
Ad1	protein:vir:96750 protein:vir:79544	VP882 cdtI	100 % 11 %
Hc1	protein:vir:96756 protein:vir:3426 protein:vir:395	VP882 lambda N15	100 % 19 % 23 %
Ne1	protein:vir:96763 protein:vir:10326 protein:vir:3427	VP882 VHML lambda	100 % 41 % 20 %
Tc1	protein:vir:96764 protein:vir:10327 protein:vir:1994	VP882 VHML Mu	100 % 22 % 12 %