Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiHSIC | Genbank acc : NC_006953 | Aclame index mge :1629

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 44

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	18	lcl\|Aclame:protein:vir:96792\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	12	lcl\|Aclame:protein:vir:96783\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	8	lcl\|Aclame:protein:vir:96782\|NCBI_annot:putative	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	23	lcl\|Aclame:protein:vir:96807\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	24	lcl\|Aclame:protein:vir:96774\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	25	lcl\|Aclame:protein:vir:96800\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:96792 protein:vir:95131 protein:vir:1583	phiHSIC PA73 phig1e	100 % 28 % 16 %
Portal	protein:vir:96783 protein:vir:95014 protein:vir:78393	phiHSIC KS7 SETP3	100 % 24 % 23 %
TermL	protein:vir:96782 protein:vir:105705 protein:vir:106641	phiHSIC ES18 187	100 % 41 % 28 %
Hc1	protein:vir:96807 protein:vir:107669 protein:vir:104346	phiHSIC T1 RTP	100 % 28 % 26 %
Ne1	protein:vir:96774 protein:vir:94994 protein:vir:78380	phiHSIC KS7 SETP3	100 % 31 % 29 %
Tc1	protein:vir:96800 protein:vir:94921	phiHSIC Xp15	100 % 21 %