Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 5 lcl|Aclame:protein:vir:4511|NCBI_annot:capsid|genbank:acc:NP_599037;genbank:gi:19548995;genbank:Gene HHsearch (proba=100.00%)
Portal 3 lcl|Aclame:protein:vir:4509|NCBI_annot:portal HHsearch (proba=100.00%)
TermL 2 lcl|Aclame:protein:vir:4508|NCBI_annot:large Blast (e-value=0)
MTP NOT FOUND
Sheath 11 lcl|Aclame:protein:vir:4517|NCBI_annot:tail HHsearch (proba=100.00%)
Ad1 6 lcl|Aclame:protein:vir:4512|NCBI_annot:unknown|genbank:acc:NP_599038;genbank:gi:19548996;genbank:Gen HHsearch (proba=100.00%)
Hc1 7 lcl|Aclame:protein:vir:4513|NCBI_annot:unknown|genbank:acc:NP_599039;genbank:gi:19548997;genbank:Gen HHsearch (proba=100.00%)
Ne1 8 lcl|Aclame:protein:vir:4514|NCBI_annot:unknown|genbank:acc:NP_599040;genbank:gi:19548998;genbank:Gen HHsearch (proba=100.00%)
Tc1 9 lcl|Aclame:protein:vir:4515|NCBI_annot:unknown|genbank:acc:NP_599041;genbank:gi:19548999;genbank:Gen HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:4511
protein:vir:485
protein:vir:81160
V
P27
Geobacillus virus E2
100 %
21 %
21 %
Portal protein:vir:4509
protein:vir:80333
protein:vir:1431
V
phi644-2
phiE125
100 %
31 %
29 %
TermL protein:vir:4508
protein:vir:4452
protein:vir:481
V
ST64B
P27
100 %
88 %
75 %
Sheath protein:vir:4517
protein:vir:4463
protein:vir:489
V
ST64B
P27
100 %
85 %
83 %
Ad1 protein:vir:4512
protein:vir:486
protein:vir:4458
V
P27
ST64B
100 %
64 %
59 %
Hc1 protein:vir:4513
protein:vir:4459
protein:vir:1890
V
ST64B
HK022
100 %
50 %
25 %
Ne1 protein:vir:4514
protein:vir:4460
protein:vir:487
V
ST64B
P27
100 %
73 %
58 %
Tc1 protein:vir:4515
protein:vir:4461
protein:vir:488
V
ST64B
P27
100 %
71 %
68 %