Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : V | Genbank acc : NC_003444 | Aclame index mge :97

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 53

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	5	lcl\|Aclame:protein:vir:4511\|NCBI_annot:capsid\|genbank:acc:NP_599037;genbank:gi:19548995;genbank:Gene	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:4509\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:4508\|NCBI_annot:large	Blast (e-value=0)
MTP	NOT FOUND
Sheath	11	lcl\|Aclame:protein:vir:4517\|NCBI_annot:tail	HHsearch (proba=100.00%)
Ad1	6	lcl\|Aclame:protein:vir:4512\|NCBI_annot:unknown\|genbank:acc:NP_599038;genbank:gi:19548996;genbank:Gen	HHsearch (proba=100.00%)
Hc1	7	lcl\|Aclame:protein:vir:4513\|NCBI_annot:unknown\|genbank:acc:NP_599039;genbank:gi:19548997;genbank:Gen	HHsearch (proba=100.00%)
Ne1	8	lcl\|Aclame:protein:vir:4514\|NCBI_annot:unknown\|genbank:acc:NP_599040;genbank:gi:19548998;genbank:Gen	HHsearch (proba=100.00%)
Tc1	9	lcl\|Aclame:protein:vir:4515\|NCBI_annot:unknown\|genbank:acc:NP_599041;genbank:gi:19548999;genbank:Gen	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:4511 protein:vir:485 protein:vir:81160	V P27 Geobacillus virus E2	100 % 21 % 21 %
Portal	protein:vir:4509 protein:vir:80333 protein:vir:1431	V phi644-2 phiE125	100 % 31 % 29 %
TermL	protein:vir:4508 protein:vir:4452 protein:vir:481	V ST64B P27	100 % 88 % 75 %
Sheath	protein:vir:4517 protein:vir:4463 protein:vir:489	V ST64B P27	100 % 85 % 83 %
Ad1	protein:vir:4512 protein:vir:486 protein:vir:4458	V P27 ST64B	100 % 64 % 59 %
Hc1	protein:vir:4513 protein:vir:4459 protein:vir:1890	V ST64B HK022	100 % 50 % 25 %
Ne1	protein:vir:4514 protein:vir:4460 protein:vir:487	V ST64B P27	100 % 73 % 58 %
Tc1	protein:vir:4515 protein:vir:4461 protein:vir:488	V ST64B P27	100 % 71 % 68 %