Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phi 4795 | Genbank acc : NC_004813 | Aclame index mge :157

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 85

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	56	lcl\|Aclame:protein:vir:93616\|NCBI_annot:putative	HHsearch (proba=100.00%)
Portal	58	lcl\|Aclame:protein:vir:93610\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	55	lcl\|Aclame:protein:vir:93598\|NCBI_annot:putative	Blast (e-value=0)
MTP	64	lcl\|Aclame:protein:vir:93600\|NCBI_annot:putative	Blast (e-value=1e-170)
Sheath	NOT FOUND
Ad1	60	lcl\|Aclame:protein:vir:93592\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	61	lcl\|Aclame:protein:vir:93599\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ne1	62	lcl\|Aclame:protein:vir:93617\|NCBI_annot:putative	HHsearch (proba=100.00%)
Tc1	63	lcl\|Aclame:protein:vir:93602\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:93616 protein:vir:80376 protein:vir:1433	phi 4795 phi644-2 phiE125	100 % 24 % 23 %
Portal	protein:vir:93610 protein:vir:100150 protein:vir:105064	phi 4795 phi1026b phiKO2	100 % 25 % 24 %
TermL	protein:vir:93598 protein:vir:100250 protein:vir:97071	phi 4795 Bcep176 OP1	100 % 58 % 48 %
MTP	protein:vir:93600 protein:vir:196 protein:vir:80349	phi 4795 HK97 phi644-2	100 % 67 % 32 %
Ad1	protein:vir:93592 protein:vir:4458 protein:vir:81159	phi 4795 ST64B Geobacillus virus E2	100 % 25 % 24 %
Hc1	protein:vir:93599 protein:vir:193 protein:vir:1890	phi 4795 HK97 HK022	100 % 45 % 25 %
Ne1	protein:vir:93617 protein:vir:194 protein:vir:100243	phi 4795 HK97 Bcep176	100 % 76 % 43 %
Tc1	protein:vir:93602 protein:vir:195 protein:vir:100242	phi 4795 HK97 Bcep176	100 % 49 % 27 %