Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Mu | Genbank acc : NC_000929 | Aclame index mge :320

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 8) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 55

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	34	lcl\|Aclame:protein:vir:1991\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	29	lcl\|Aclame:protein:vir:1986\|NCBI_annot:Hypothetical	HHsearch (proba=100.00%)
TermL	28	lcl\|Aclame:protein:vir:1985\|NCBI_annot:putative	Blast (e-value=0)
MTP	NOT FOUND
Sheath	39	lcl\|Aclame:protein:vir:1996\|NCBI_annot:major	HHsearch (proba=100.00%)
Ad1	36	lcl\|Aclame:protein:vir:1993\|NCBI_annot:Hypothetical	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	31	lcl\|Aclame:protein:vir:1988\|NCBI_annot:putative	HHsearch (proba=100.00%)
Tc1	37	lcl\|Aclame:protein:vir:1994\|NCBI_annot:Hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Ad1	5	4
Ne1<->Tc1	6	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:1991 protein:vir:79246 protein:vir:99228	Mu Phage MP22 DMS3	100 % 49 % 49 %
Portal	protein:vir:1986 protein:vir:79233 protein:vir:99232	Mu Phage MP22 DMS3	100 % 45 % 45 %
TermL	protein:vir:1985 protein:vir:79096 protein:vir:107886	Mu phiE255 BcepMu	100 % 46 % 46 %
Sheath	protein:vir:1996 protein:vir:4463 protein:vir:4517	Mu ST64B V	100 % 39 % 37 %
Ad1	protein:vir:1993 protein:vir:103846 protein:vir:79074	Mu D3112 phiE255	100 % 31 % 27 %
Ne1	protein:vir:1988 protein:vir:103841 protein:vir:79225	Mu D3112 Phage MP22	100 % 37 % 34 %
Tc1	protein:vir:1994 protein:vir:10327 protein:vir:107857	Mu VHML BcepMu	100 % 13 % 19 %