Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 34 lcl|Aclame:protein:vir:1991|NCBI_annot:major HHsearch (proba=100.00%)
Portal 29 lcl|Aclame:protein:vir:1986|NCBI_annot:Hypothetical HHsearch (proba=100.00%)
TermL 28 lcl|Aclame:protein:vir:1985|NCBI_annot:putative Blast (e-value=0)
MTP NOT FOUND
Sheath 39 lcl|Aclame:protein:vir:1996|NCBI_annot:major HHsearch (proba=100.00%)
Ad1 36 lcl|Aclame:protein:vir:1993|NCBI_annot:Hypothetical HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 31 lcl|Aclame:protein:vir:1988|NCBI_annot:putative HHsearch (proba=100.00%)
Tc1 37 lcl|Aclame:protein:vir:1994|NCBI_annot:Hypothetical HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ne1<->Ad1 5 4
Ne1<->Tc1 6 2


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:1991
protein:vir:79246
protein:vir:99228
Mu
Phage MP22
DMS3
100 %
49 %
49 %
Portal protein:vir:1986
protein:vir:79233
protein:vir:99232
Mu
Phage MP22
DMS3
100 %
45 %
45 %
TermL protein:vir:1985
protein:vir:79096
protein:vir:107886
Mu
phiE255
BcepMu
100 %
46 %
46 %
Sheath protein:vir:1996
protein:vir:4463
protein:vir:4517
Mu
ST64B
V
100 %
39 %
37 %
Ad1 protein:vir:1993
protein:vir:103846
protein:vir:79074
Mu
D3112
phiE255
100 %
31 %
27 %
Ne1 protein:vir:1988
protein:vir:103841
protein:vir:79225
Mu
D3112
Phage MP22
100 %
37 %
34 %
Tc1 protein:vir:1994
protein:vir:10327
protein:vir:107857
Mu
VHML
BcepMu
100 %
13 %
19 %