Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : ES18 | Genbank acc : NC_006949 | Aclame index mge :1501

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 79

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	9	lcl\|Aclame:protein:vir:105778\|NCBI_annot:gp9\|genbank:acc:YP_224147;genbank:gi:62362222;genbank:GeneI	HHsearch (proba=100.00%)
Portal	5	lcl\|Aclame:protein:vir:105782\|NCBI_annot:gp5\|genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneI	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:105705\|NCBI_annot:gp2\|genbank:acc:YP_224140;genbank:gi:62362215;genbank:GeneI	Blast (e-value=0)
MTP	16	lcl\|Aclame:protein:vir:105771\|NCBI_annot:gp16\|genbank:acc:YP_224154;genbank:gi:62362229;genbank:Gene	Blast (e-value=1e-143)
Sheath	NOT FOUND
Ad1	11	lcl\|Aclame:protein:vir:105776\|NCBI_annot:gp11\|genbank:acc:YP_224149;genbank:gi:62362224;genbank:Gene	HHsearch (proba=100.00%)
Hc1	13	lcl\|Aclame:protein:vir:105774\|NCBI_annot:gp13\|genbank:acc:YP_224151;genbank:gi:62362226;genbank:Gene	HHsearch (proba=100.00%)
Ne1	14	lcl\|Aclame:protein:vir:105773\|NCBI_annot:gp14\|genbank:acc:YP_224152;genbank:gi:62362227;genbank:Gene	HHsearch (proba=100.00%)
Tc1	15	lcl\|Aclame:protein:vir:105772\|NCBI_annot:gp15\|genbank:acc:YP_224153;genbank:gi:62362228;genbank:Gene	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:105778 protein:vir:5255 protein:vir:79642	ES18 Aaphi23 TLS	100 % 15 % 13 %
Portal	protein:vir:105782 protein:vir:79647 protein:vir:104338	ES18 TLS RTP	100 % 16 % 15 %
TermL	protein:vir:105705 protein:vir:96782 protein:vir:95761	ES18 phiHSIC SMP	100 % 41 % 24 %
MTP	protein:vir:105771 protein:vir:196 protein:vir:93600	ES18 HK97 phi 4795	100 % 21 % 21 %
Ad1	protein:vir:105776 protein:vir:104344 protein:vir:5256	ES18 RTP Aaphi23	100 % 20 % 15 %
Hc1	protein:vir:105774	ES18	100 %
Ne1	protein:vir:105773 protein:vir:96829 protein:vir:94108	ES18 EW 96	100 % 19 % 18 %
Tc1	protein:vir:105772 protein:vir:9648 protein:vir:1643	ES18 315.1 r1t	100 % 15 % 13 %