Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 37 | Genbank acc : NC_007055 | Aclame index mge :1602

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 70

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|Aclame:protein:vir:96123\|NCBI_annot:ORF013\|genbank:acc:YP_240078;genbank:gi:66395742;genbank:Gen	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:96179\|NCBI_annot:ORF007\|genbank:acc:YP_240075;genbank:gi:66395736;genbank:Gen	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:96147\|NCBI_annot:ORF009\|genbank:acc:YP_240074;genbank:gi:66395738;genbank:Gen	Blast (e-value=0)
MTP	12	lcl\|Aclame:protein:vir:96154\|NCBI_annot:ORF024\|genbank:acc:YP_240085;genbank:gi:66395751;genbank:Gen	Blast (e-value=1e-107)
Sheath	NOT FOUND
Ad1	8	lcl\|Aclame:protein:vir:96128\|NCBI_annot:ORF050\|genbank:acc:YP_240080;genbank:gi:66395776;genbank:Gen	HHsearch (proba=100.00%)
Hc1	9	lcl\|Aclame:protein:vir:96131\|NCBI_annot:ORF047\|genbank:acc:YP_240081;genbank:gi:66395773;genbank:Gen	HHsearch (proba=100.00%)
Ne1	10	lcl\|Aclame:protein:vir:96121\|NCBI_annot:ORF040\|genbank:acc:YP_240082;genbank:gi:66395767;genbank:Gen	HHsearch (proba=100.00%)
Tc1	11	lcl\|Aclame:protein:vir:96125\|NCBI_annot:ORF038\|genbank:acc:YP_240084;genbank:gi:66395765;genbank:Gen	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:96123 protein:vir:105334 protein:vir:96262	37 PH15 ROSA	100 % 81 % 81 %
Portal	protein:vir:96179 protein:vir:96839 protein:vir:105292	37 EW PH15	100 % 84 % 76 %
TermL	protein:vir:96147 protein:vir:107098 protein:vir:105297	37 CNPH82 PH15	100 % 85 % 84 %
MTP	protein:vir:96154 protein:vir:105312 protein:vir:107114	37 PH15 CNPH82	95 % 46 % 46 %
Ad1	protein:vir:96128 protein:vir:105327 protein:vir:107119	37 PH15 CNPH82	100 % 64 % 64 %
Hc1	protein:vir:96131 protein:vir:107100 protein:vir:97429	37 CNPH82 92	100 % 61 % 60 %
Ne1	protein:vir:96121 protein:vir:105916 protein:vir:94108	37 phiETA3 96	100 % 77 % 77 %
Tc1	protein:vir:96125 protein:vir:105337 protein:vir:107096	37 PH15 CNPH82	100 % 53 % 53 %