Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiMMP04 | Genbank acc : NC_019422

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 51

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	4	lcl\|NC_019422.1_cdsid_YP_006990558.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_019422.1_cdsid_YP_006990557.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_019422.1_cdsid_YP_006990556.1	Blast (e-value=6e-68)
MTP	NOT FOUND
Sheath	10	lcl\|NC_019422.1_cdsid_YP_006990564.1	HHsearch (proba=100.00%)
Ad1	6	lcl\|NC_019422.1_cdsid_YP_006990560.1	HHsearch (proba=99.96%)
Hc1	7	lcl\|NC_019422.1_cdsid_YP_006990561.1	HHsearch (proba=100.00%)
Ne1	8	lcl\|NC_019422.1_cdsid_YP_006990562.1	HHsearch (proba=100.00%)
Tc1	9	lcl\|NC_019422.1_cdsid_YP_006990563.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79548	cdtI	30 %
Portal	protein:vir:9359 protein:vir:96980 protein:vir:94426	phi 12 42e 47	20 % 19 % 19 %
TermL	protein:vir:78630 protein:vir:94427 protein:vir:93883	tp310-2 47 3A	32 % 32 % 32 %
Sheath	protein:vir:102359 protein:vir:102957 protein:vir:105470	phi CD119 EJ-1 KC5a	42 % 20 % 19 %
Ad1	protein:vir:102158 protein:vir:1384 protein:vir:102083	phiSM101 phi3626 Fah	40 % 39 % 38 %
Hc1	protein:vir:100134 protein:vir:80342 protein:vir:1436	phi1026b phi644-2 phiE125	27 % 25 % 25 %
Ne1	protein:vir:80116 protein:vir:79034 protein:vir:102338	bacteriophage bv1 phiC2 phi CD119	22 % 21 % 21 %
Tc1	protein:vir:102339 protein:vir:102955 protein:vir:105468	phi CD119 EJ-1 KC5a	25 % 24 % 22 %