Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 3A | Genbank acc : NC_007053 | Aclame index mge :1485

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 67

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	5	lcl\|Aclame:protein:vir:93881\|NCBI_annot:ORF011\|genbank:acc:YP_239938;genbank:gi:66395599;genbank:Gen	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:93943\|NCBI_annot:ORF010\|genbank:acc:YP_239936;genbank:gi:66395598;genbank:Gen	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:93883\|NCBI_annot:ORF005\|genbank:acc:YP_239935;genbank:gi:66395593;genbank:Gen	Blast (e-value=0)
MTP	11	lcl\|Aclame:protein:vir:93909\|NCBI_annot:ORF017\|genbank:acc:YP_239944;genbank:gi:66395605;genbank:Gen	Blast (e-value=1e-124)
Sheath	NOT FOUND
Ad1	6	lcl\|Aclame:protein:vir:93879\|NCBI_annot:ORF046\|genbank:acc:YP_239939;genbank:gi:66395631;genbank:Gen	HHsearch (proba=99.96%)
Hc1	8	lcl\|Aclame:protein:vir:93906\|NCBI_annot:ORF036\|genbank:acc:YP_239941;genbank:gi:66395624;genbank:Gen	HHsearch (proba=100.00%)
Ne1	9	lcl\|Aclame:protein:vir:93898\|NCBI_annot:ORF028\|genbank:acc:YP_239942;genbank:gi:66395616;genbank:Gen	HHsearch (proba=100.00%)
Tc1	10	lcl\|Aclame:protein:vir:93902\|NCBI_annot:ORF029\|genbank:acc:YP_239943;genbank:gi:66395617;genbank:Gen	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:93881 protein:vir:96978 protein:vir:94424	3A 42e 47	100 % 98 % 98 %
Portal	protein:vir:94426 protein:vir:93943 protein:vir:2683	47 3A phiSLT	100 % 100 % 100 %
TermL	protein:vir:78630 protein:vir:94427 protein:vir:93883	tp310-2 47 3A	100 % 100 % 100 %
MTP	protein:vir:93909 protein:vir:78634 protein:vir:96971	3A tp310-2 42e	100 % 98 % 98 %
Ad1	protein:vir:93879 protein:vir:78636 protein:vir:96976	3A tp310-2 42e	100 % 99 % 99 %
Hc1	protein:vir:93906 protein:vir:2687 protein:vir:78645	3A phiSLT tp310-2	100 % 100 % 95 %
Ne1	protein:vir:93898 protein:vir:2688 protein:vir:78644	3A phiSLT tp310-2	100 % 99 % 97 %
Tc1	protein:vir:93902 protein:vir:94418 protein:vir:78648	3A 47 tp310-2	100 % 98 % 97 %