Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 5 lcl|Aclame:protein:vir:79548|NCBI_annot:putative HHsearch (proba=100.00%)
Portal 4 lcl|Aclame:protein:vir:79538|NCBI_annot:putative HHsearch (proba=100.00%)
TermL 2 lcl|Aclame:protein:vir:79539|NCBI_annot:putative Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 3 lcl|Aclame:protein:vir:79544|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Hc1 7 lcl|Aclame:protein:vir:79549|NCBI_annot:hypothetical HHsearch (proba=98.10%)
Ne1 8 lcl|Aclame:protein:vir:79555|NCBI_annot:putative HHsearch (proba=100.00%)
Tc1 9 lcl|Aclame:protein:vir:79571|NCBI_annot:putative HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ad1<->Hc1 4 2
Tc1<->Ad1 6 4
Ne1<->Ad1 5 3


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:79548
protein:vir:79246
protein:vir:99228
cdtI
Phage MP22
DMS3
100 %
24 %
24 %
Portal protein:vir:79538
protein:vir:96738
protein:vir:10321
cdtI
VP882
VHML
100 %
22 %
22 %
TermL protein:vir:79539
protein:vir:6384
protein:vir:10320
cdtI
BcepNazgul
VHML
100 %
39 %
23 %
Ad1 protein:vir:79544
protein:vir:96750
protein:vir:3419
cdtI
VP882
lambda
100 %
16 %
24 %
Hc1 protein:vir:3426
protein:vir:395
protein:vir:97237
lambda
N15
M6
24 %
20 %
13 %
Ne1 protein:vir:79555
protein:vir:396
protein:vir:3427
cdtI
N15
lambda
100 %
57 %
55 %
Tc1 protein:vir:79571
protein:vir:3428
protein:vir:397
cdtI
lambda
N15
100 %
49 %
48 %