Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 42e | Genbank acc : NC_007052 | Aclame index mge :1643

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 79

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	5	lcl\|Aclame:protein:vir:96978\|NCBI_annot:ORF009\|genbank:acc:YP_239859;genbank:gi:66395517;genbank:Gen	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:96980\|NCBI_annot:ORF008\|genbank:acc:YP_239857;genbank:gi:66395516;genbank:Gen	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:96981\|NCBI_annot:ORF003\|genbank:acc:YP_239856;genbank:gi:66395511;genbank:Gen	Blast (e-value=0)
MTP	12	lcl\|Aclame:protein:vir:96971\|NCBI_annot:ORF021\|genbank:acc:YP_239866;genbank:gi:66395529;genbank:Gen	Blast (e-value=1e-124)
Sheath	NOT FOUND
Ad1	7	lcl\|Aclame:protein:vir:96976\|NCBI_annot:ORF055\|genbank:acc:YP_239861;genbank:gi:66395558;genbank:Gen	HHsearch (proba=99.96%)
Hc1	9	lcl\|Aclame:protein:vir:96974\|NCBI_annot:ORF042\|genbank:acc:YP_239863;genbank:gi:66395550;genbank:Gen	HHsearch (proba=100.00%)
Ne1	10	lcl\|Aclame:protein:vir:96973\|NCBI_annot:ORF034\|genbank:acc:YP_239864;genbank:gi:66395542;genbank:Gen	HHsearch (proba=100.00%)
Tc1	11	lcl\|Aclame:protein:vir:96972\|NCBI_annot:ORF035\|genbank:acc:YP_239865;genbank:gi:66395543;genbank:Gen	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:96978 protein:vir:94424 protein:vir:9361	42e 47 phi 12	100 % 100 % 100 %
Portal	protein:vir:96980 protein:vir:9359 protein:vir:94426	42e phi 12 47	100 % 100 % 99 %
TermL	protein:vir:96981 protein:vir:9358 protein:vir:2682	42e phi 12 phiSLT	100 % 100 % 99 %
MTP	protein:vir:78634 protein:vir:96971 protein:vir:94417	tp310-2 42e 47	100 % 100 % 100 %
Ad1	protein:vir:78636 protein:vir:96976 protein:vir:94422	tp310-2 42e 47	100 % 100 % 100 %
Hc1	protein:vir:78645 protein:vir:96974 protein:vir:94420	tp310-2 42e 47	100 % 100 % 100 %
Ne1	protein:vir:78644 protein:vir:96973 protein:vir:94419	tp310-2 42e 47	100 % 100 % 100 %
Tc1	protein:vir:78648 protein:vir:96972 protein:vir:9364	tp310-2 42e phi 12	100 % 100 % 100 %