Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiMMP02 | Genbank acc : NC_019421

Category to which the Query Phage was assigned : Myoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 76

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|NC_019421.1_cdsid_YP_006990485.1	HHsearch (proba=96.08%)
Portal	3	lcl\|NC_019421.1_cdsid_YP_006990481.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_019421.1_cdsid_YP_006990480.1	Blast (e-value=2e-37)
MTP	NOT FOUND
Sheath	13	lcl\|NC_019421.1_cdsid_YP_006990491.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	9	lcl\|NC_019421.1_cdsid_YP_006990487.1	HHsearch (proba=96.42%)
Ne1	10	lcl\|NC_019421.1_cdsid_YP_006990488.1	HHsearch (proba=100.00%)
Tc1	11	lcl\|NC_019421.1_cdsid_YP_006990489.1	HHsearch (proba=97.70%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:97433 protein:vir:94494 protein:vir:9820	92 88 315.4	16 % 16 % 17 %
Portal	protein:vir:3609 protein:vir:733 protein:vir:3964	TP901-1 Tuc2009 ul36	18 % 17 % 17 %
TermL	protein:vir:106508 protein:vir:100880 protein:vir:4950	phiAsp2 Lc-Nu Sfi19	29 % 18 % 18 %
Sheath	protein:vir:102957 protein:vir:78986 protein:vir:105470	EJ-1 phiC2 KC5a	25 % 21 % 19 %
Hc1	protein:vir:7447 protein:vir:102189 protein:vir:101507	Barnyard PBI1 PLot	14 % 17 % 17 %
Ne1	protein:vir:94654 protein:vir:99101 protein:vir:8669	mu1/6 Qyrzula Rosebush	30 % 23 % 23 %
Tc1	protein:vir:96260 protein:vir:105892 protein:vir:94096	ROSA phiETA3 96	20 % 20 % 20 %