Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 7 lcl|NC_019421.1_cdsid_YP_006990485.1 HHsearch (proba=96.08%)
Portal 3 lcl|NC_019421.1_cdsid_YP_006990481.1 HHsearch (proba=100.00%)
TermL 2 lcl|NC_019421.1_cdsid_YP_006990480.1 Blast (e-value=2e-37)
MTP NOT FOUND
Sheath 13 lcl|NC_019421.1_cdsid_YP_006990491.1 HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 9 lcl|NC_019421.1_cdsid_YP_006990487.1 HHsearch (proba=96.42%)
Ne1 10 lcl|NC_019421.1_cdsid_YP_006990488.1 HHsearch (proba=100.00%)
Tc1 11 lcl|NC_019421.1_cdsid_YP_006990489.1 HHsearch (proba=97.70%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:97433
protein:vir:94494
protein:vir:9820
92
88
315.4
16 %
16 %
17 %
Portal protein:vir:3609
protein:vir:733
protein:vir:3964
TP901-1
Tuc2009
ul36
18 %
17 %
17 %
TermL protein:vir:106508
protein:vir:100880
protein:vir:4950
phiAsp2
Lc-Nu
Sfi19
29 %
18 %
18 %
Sheath protein:vir:102957
protein:vir:78986
protein:vir:105470
EJ-1
phiC2
KC5a
25 %
21 %
19 %
Hc1 protein:vir:7447
protein:vir:102189
protein:vir:101507
Barnyard
PBI1
PLot
14 %
17 %
17 %
Ne1 protein:vir:94654
protein:vir:99101
protein:vir:8669
mu1/6
Qyrzula
Rosebush
30 %
23 %
23 %
Tc1 protein:vir:96260
protein:vir:105892
protein:vir:94096
ROSA
phiETA3
96
20 %
20 %
20 %