Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Lc-Nu | Genbank acc : NC_007501 | Aclame index mge :1473

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 51

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|Aclame:protein:vir:100884\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	4	lcl\|Aclame:protein:vir:100882\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:100880\|NCBI_annot:putative	Blast (e-value=0)
MTP	11	lcl\|Aclame:protein:vir:100889\|NCBI_annot:major	Blast (e-value=1e-115)
Sheath	NOT FOUND
Ad1	7	lcl\|Aclame:protein:vir:100885\|NCBI_annot:putative	HHsearch (proba=100.00%)
Hc1	8	lcl\|Aclame:protein:vir:100886\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ne1	9	lcl\|Aclame:protein:vir:100887\|NCBI_annot:putative	HHsearch (proba=100.00%)
Tc1	10	lcl\|Aclame:protein:vir:100888\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:100884 protein:vir:100172 protein:vir:9704	Lc-Nu phi AT3 315.2	100 % 89 % 41 %
Portal	protein:vir:100882 protein:vir:100187 protein:vir:1082	Lc-Nu phi AT3 bIL309	100 % 97 % 29 %
TermL	protein:vir:100880 protein:vir:100199 protein:vir:3842	Lc-Nu phi AT3 phi adh	100 % 97 % 38 %
MTP	protein:vir:100889 protein:vir:100188 protein:vir:4957	Lc-Nu phi AT3 Sfi19	100 % 76 % 53 %
Ad1	protein:vir:100885 protein:vir:100211 protein:vir:4831	Lc-Nu phi AT3 7201	100 % 80 % 23 %
Hc1	protein:vir:100886 protein:vir:100226 protein:vir:1086	Lc-Nu phi AT3 bIL309	100 % 96 % 45 %
Ne1	protein:vir:100887 protein:vir:100223 protein:vir:4833	Lc-Nu phi AT3 7201	100 % 95 % 47 %
Tc1	protein:vir:100888 protein:vir:100200 protein:vir:5001	Lc-Nu phi AT3 Sfi21	100 % 78 % 34 %