Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Tuc2009 | Genbank acc : NC_002703 | Aclame index mge :14

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 56

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	37	lcl\|Aclame:protein:vir:739\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	31	lcl\|Aclame:protein:vir:733\|NCBI_annot:minor	HHsearch (proba=100.00%)
TermL	30	lcl\|Aclame:protein:vir:732\|NCBI_annot:unknown\|genbank:acc:NP_108709;genbank:gi:13487831;genbank:Gene	Blast (e-value=0)
MTP	43	lcl\|Aclame:protein:vir:745\|NCBI_annot:unknown\|genbank:acc:NP_108722;genbank:gi:13487844;genbank:Gene	Blast (e-value=2e-94)
Sheath	NOT FOUND
Ad1	39	lcl\|Aclame:protein:vir:741\|NCBI_annot:unknown\|genbank:acc:NP_108718;genbank:gi:13487840;genbank:Gene	HHsearch (proba=100.00%)
Hc1	40	lcl\|Aclame:protein:vir:742\|NCBI_annot:unknown\|genbank:acc:NP_108719;genbank:gi:13487841;genbank:Gene	HHsearch (proba=100.00%)
Ne1	41	lcl\|Aclame:protein:vir:743\|NCBI_annot:unknown\|genbank:acc:NP_108720;genbank:gi:13487842;genbank:Gene	HHsearch (proba=100.00%)
Tc1	42	lcl\|Aclame:protein:vir:744\|NCBI_annot:major	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:739 protein:vir:3613 protein:vir:9820	Tuc2009 TP901-1 315.4	100 % 94 % 48 %
Portal	protein:vir:733 protein:vir:3609 protein:vir:3964	Tuc2009 TP901-1 ul36	100 % 69 % 67 %
TermL	protein:vir:732 protein:vir:3608 protein:vir:3963	Tuc2009 TP901-1 ul36	100 % 97 % 95 %
MTP	protein:vir:3973 protein:vir:745 protein:vir:3619	ul36 Tuc2009 TP901-1	100 % 100 % 90 %
Ad1	protein:vir:741 protein:vir:3970 protein:vir:3615	Tuc2009 ul36 TP901-1	100 % 93 % 91 %
Hc1	protein:vir:742 protein:vir:3971 protein:vir:3616	Tuc2009 ul36 TP901-1	100 % 93 % 93 %
Ne1	protein:vir:743 protein:vir:98409 protein:vir:3617	Tuc2009 ul36 TP901-1	100 % 92 % 67 %
Tc1	protein:vir:744 protein:vir:3618 protein:vir:3972	Tuc2009 TP901-1 ul36	100 % 99 % 95 %