Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : SSU5 | Genbank acc : NC_018843

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 130

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	5	lcl\|NC_018843.1_cdsid_YP_006906637.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_018843.1_cdsid_YP_006906635.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_018843.1_cdsid_YP_006906634.1	Blast (e-value=1e-27)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	8	lcl\|NC_018843.1_cdsid_YP_006906640.1	HHsearch (proba=97.83%)
Hc1	9	lcl\|NC_018843.1_cdsid_YP_006906641.1	HHsearch (proba=95.08%)
Ne1	10	lcl\|NC_018843.1_cdsid_YP_006906642.1	HHsearch (proba=98.25%)
Tc1	11	lcl\|NC_018843.1_cdsid_YP_006906643.1	HHsearch (proba=74.58%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:94933 protein:vir:97255 protein:vir:80376	Xp15 M6 phi644-2	36 % 34 % 16 %
Portal	protein:vir:97265 protein:vir:2500 protein:vir:78227	M6 TM4 Bethlehem	16 % 16 % 15 %
TermL	protein:vir:101493 protein:vir:102238 protein:vir:94991	PLot PBI1 KS7	26 % 25 % 25 %
Ad1	protein:vir:94955 protein:vir:95176 protein:vir:78383	Xp15 PA73 SETP3	15 % 19 % 16 %
Hc1	protein:vir:44 protein:vir:80934 protein:vir:79686	A118 A500 LL-H	16 % 15 % 16 %
Ne1	protein:vir:94108 protein:vir:105916 protein:vir:9930	96 phiETA3 315.6	24 % 24 % 23 %
Tc1	protein:vir:105772 protein:vir:4348 protein:vir:97070	ES18 D3 OP1	13 % 14 % 12 %