Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : A500 | Genbank acc : NC_009810 | Aclame index mge :1886

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 61

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|Aclame:protein:vir:80930\|NCBI_annot:Cps\|genbank:acc:YP_001468392;genbank:gi:157324966;genbank:Ge	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:80959\|NCBI_annot:gp3\|genbank:acc:YP_001468389;genbank:gi:157324963;genbank:Ge	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:80960\|NCBI_annot:TerL\|genbank:acc:YP_001468388;genbank:gi:157324962;genbank:G	Blast (e-value=0)
MTP	11	lcl\|Aclame:protein:vir:80923\|NCBI_annot:Tsh\|genbank:acc:YP_001468398;genbank:gi:157324972;genbank:Ge	Blast (e-value=6e-83)
Sheath	NOT FOUND
Ad1	7	lcl\|Aclame:protein:vir:80967\|NCBI_annot:gp8\|genbank:acc:YP_001468394;genbank:gi:157324968;genbank:Ge	HHsearch (proba=100.00%)
Hc1	8	lcl\|Aclame:protein:vir:80934\|NCBI_annot:gp9\|genbank:acc:YP_001468395;genbank:gi:157324969;genbank:Ge	HHsearch (proba=100.00%)
Ne1	9	lcl\|Aclame:protein:vir:80970\|NCBI_annot:gp10\|genbank:acc:YP_001468396;genbank:gi:157324970;genbank:G	HHsearch (proba=100.00%)
Tc1	10	lcl\|Aclame:protein:vir:80941\|NCBI_annot:gp11\|genbank:acc:YP_001468397;genbank:gi:157324971;genbank:G	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:80930 protein:vir:105334 protein:vir:96833	A500 PH15 EW	100 % 46 % 46 %
Portal	protein:vir:80959 protein:vir:38 protein:vir:98883	A500 A118 BCJA1c	100 % 95 % 34 %
TermL	protein:vir:80960 protein:vir:37 protein:vir:4781	A500 A118 MM1	100 % 95 % 53 %
MTP	protein:vir:80923 protein:vir:47 protein:vir:4792	A500 A118 MM1	100 % 94 % 45 %
Ad1	protein:vir:80967 protein:vir:43 protein:vir:98900	A500 A118 BCJA1c	100 % 95 % 35 %
Hc1	protein:vir:80934 protein:vir:44 protein:vir:98924	A500 A118 BCJA1c	100 % 93 % 27 %
Ne1	protein:vir:80970 protein:vir:45 protein:vir:98892	A500 A118 BCJA1c	100 % 93 % 34 %
Tc1	protein:vir:80941 protein:vir:46 protein:vir:9824	A500 A118 315.4	100 % 89 % 25 %