Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 6 lcl|Aclame:protein:vir:80930|NCBI_annot:Cps|genbank:acc:YP_001468392;genbank:gi:157324966;genbank:Ge HHsearch (proba=100.00%)
Portal 3 lcl|Aclame:protein:vir:80959|NCBI_annot:gp3|genbank:acc:YP_001468389;genbank:gi:157324963;genbank:Ge HHsearch (proba=100.00%)
TermL 2 lcl|Aclame:protein:vir:80960|NCBI_annot:TerL|genbank:acc:YP_001468388;genbank:gi:157324962;genbank:G Blast (e-value=0)
MTP 11 lcl|Aclame:protein:vir:80923|NCBI_annot:Tsh|genbank:acc:YP_001468398;genbank:gi:157324972;genbank:Ge Blast (e-value=6e-83)
Sheath NOT FOUND
Ad1 7 lcl|Aclame:protein:vir:80967|NCBI_annot:gp8|genbank:acc:YP_001468394;genbank:gi:157324968;genbank:Ge HHsearch (proba=100.00%)
Hc1 8 lcl|Aclame:protein:vir:80934|NCBI_annot:gp9|genbank:acc:YP_001468395;genbank:gi:157324969;genbank:Ge HHsearch (proba=100.00%)
Ne1 9 lcl|Aclame:protein:vir:80970|NCBI_annot:gp10|genbank:acc:YP_001468396;genbank:gi:157324970;genbank:G HHsearch (proba=100.00%)
Tc1 10 lcl|Aclame:protein:vir:80941|NCBI_annot:gp11|genbank:acc:YP_001468397;genbank:gi:157324971;genbank:G HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:80930
protein:vir:105334
protein:vir:96833
A500
PH15
EW
100 %
46 %
46 %
Portal protein:vir:80959
protein:vir:38
protein:vir:98883
A500
A118
BCJA1c
100 %
95 %
34 %
TermL protein:vir:80960
protein:vir:37
protein:vir:4781
A500
A118
MM1
100 %
95 %
53 %
MTP protein:vir:80923
protein:vir:47
protein:vir:4792
A500
A118
MM1
100 %
94 %
45 %
Ad1 protein:vir:80967
protein:vir:43
protein:vir:98900
A500
A118
BCJA1c
100 %
95 %
35 %
Hc1 protein:vir:80934
protein:vir:44
protein:vir:98924
A500
A118
BCJA1c
100 %
93 %
27 %
Ne1 protein:vir:80970
protein:vir:45
protein:vir:98892
A500
A118
BCJA1c
100 %
93 %
34 %
Tc1 protein:vir:80941
protein:vir:46
protein:vir:9824
A500
A118
315.4
100 %
89 %
25 %