Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : A118 | Genbank acc : NC_003216 | Aclame index mge :2

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 72

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|Aclame:protein:vir:41\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:38\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:37\|NCBI_annot:putative	Blast (e-value=0)
MTP	12	lcl\|Aclame:protein:vir:47\|NCBI_annot:major	Blast (e-value=2e-82)
Sheath	NOT FOUND
Ad1	8	lcl\|Aclame:protein:vir:43\|NCBI_annot:gp8\|genbank:acc:NP_463469;swissprot:trembl:q9t1b5;genbank:gi:16	HHsearch (proba=100.00%)
Hc1	9	lcl\|Aclame:protein:vir:44\|NCBI_annot:gp9\|genbank:acc:NP_463470;swissprot:trembl:q9t1b4;genbank:gi:16	HHsearch (proba=100.00%)
Ne1	10	lcl\|Aclame:protein:vir:45\|NCBI_annot:gp10\|genbank:acc:NP_463471;swissprot:trembl:q9t1b3;genbank:gi:1	HHsearch (proba=100.00%)
Tc1	11	lcl\|Aclame:protein:vir:46\|NCBI_annot:gp11\|genbank:acc:NP_463472;swissprot:trembl:q9t1b2;genbank:gi:1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:41 protein:vir:105905 protein:vir:94142	A118 phiETA3 96	100 % 44 % 44 %
Portal	protein:vir:38 protein:vir:80959 protein:vir:98883	A118 A500 BCJA1c	100 % 95 % 34 %
TermL	protein:vir:37 protein:vir:80960 protein:vir:4781	A118 A500 MM1	100 % 95 % 52 %
MTP	protein:vir:47 protein:vir:80923 protein:vir:4792	A118 A500 MM1	100 % 94 % 44 %
Ad1	protein:vir:43 protein:vir:80967 protein:vir:98900	A118 A500 BCJA1c	100 % 95 % 35 %
Hc1	protein:vir:44 protein:vir:80934 protein:vir:98924	A118 A500 BCJA1c	100 % 93 % 26 %
Ne1	protein:vir:45 protein:vir:80970 protein:vir:98892	A118 A500 BCJA1c	100 % 93 % 35 %
Tc1	protein:vir:46 protein:vir:80941 protein:vir:9824	A118 A500 315.4	100 % 89 % 26 %