Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : SETP3 | Genbank acc : NC_009232 | Aclame index mge :1851

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 53

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	37	lcl\|Aclame:protein:vir:78387\|NCBI_annot:putative	HHsearch (proba=100.00%)
Portal	31	lcl\|Aclame:protein:vir:78393\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	30	lcl\|Aclame:protein:vir:78394\|NCBI_annot:hypothetical	Blast (e-value=0)
MTP	46	lcl\|Aclame:protein:vir:78378\|NCBI_annot:putative	Blast (e-value=0)
Sheath	NOT FOUND
Ad1	41	lcl\|Aclame:protein:vir:78383\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	43	lcl\|Aclame:protein:vir:78381\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	44	lcl\|Aclame:protein:vir:78380\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	45	lcl\|Aclame:protein:vir:78379\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:78387 protein:vir:94989 protein:vir:80446	SETP3 KS7 BcepGomr	100 % 97 % 39 %
Portal	protein:vir:78393 protein:vir:95014 protein:vir:95149	SETP3 KS7 PA73	100 % 94 % 35 %
TermL	protein:vir:78394 protein:vir:94991 protein:vir:106551	SETP3 KS7 Lj965	100 % 96 % 19 %
MTP	protein:vir:78378 protein:vir:97240 protein:vir:80398	SETP3 M6 BcepGomr	100 % 16 % 14 %
Ad1	protein:vir:78383 protein:vir:95004 protein:vir:95176	SETP3 KS7 PA73	100 % 96 % 35 %
Hc1	protein:vir:78381 protein:vir:94992 protein:vir:97237	SETP3 KS7 M6	100 % 97 % 22 %
Ne1	protein:vir:78380 protein:vir:94994 protein:vir:104347	SETP3 KS7 RTP	100 % 94 % 32 %
Tc1	protein:vir:78379 protein:vir:94997 protein:vir:103278	SETP3 KS7 JK06	100 % 96 % 24 %