Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : KS7 | Genbank acc : NC_006940 | Aclame index mge :1547

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 59

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	9	lcl\|Aclame:protein:vir:94989\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Portal	15	lcl\|Aclame:protein:vir:95014\|NCBI_annot:structural	HHsearch (proba=100.00%)
TermL	16	lcl\|Aclame:protein:vir:94991\|NCBI_annot:hypothetical	Blast (e-value=0)
MTP	7	lcl\|Aclame:protein:vir:94996\|NCBI_annot:hypothetical	Blast (e-value=2e-08)
Sheath	NOT FOUND
Ad1	5	lcl\|Aclame:protein:vir:95004\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	3	lcl\|Aclame:protein:vir:94992\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	2	lcl\|Aclame:protein:vir:94994\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	1	lcl\|Aclame:protein:vir:94997\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:94989 protein:vir:78387 protein:vir:80446	KS7 SETP3 BcepGomr	100 % 97 % 37 %
Portal	protein:vir:95014 protein:vir:78393 protein:vir:95149	KS7 SETP3 PA73	100 % 94 % 33 %
TermL	protein:vir:94991 protein:vir:78394 protein:vir:106551	KS7 SETP3 Lj965	100 % 96 % 20 %
MTP	protein:vir:105771 protein:vir:93600 protein:vir:196	ES18 phi 4795 HK97	27 % 27 % 26 %
Ad1	protein:vir:95004 protein:vir:78383 protein:vir:95176	KS7 SETP3 PA73	100 % 96 % 35 %
Hc1	protein:vir:94992 protein:vir:78381 protein:vir:97237	KS7 SETP3 M6	100 % 97 % 27 %
Ne1	protein:vir:94994 protein:vir:78380 protein:vir:103280	KS7 SETP3 JK06	100 % 94 % 32 %
Tc1	protein:vir:94997 protein:vir:78379 protein:vir:103278	KS7 SETP3 JK06	100 % 96 % 24 %