Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Bethlehem | Genbank acc : NC_009878 | Aclame index mge :1849

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 87

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	15	lcl\|Aclame:protein:vir:78223\|NCBI_annot:Putative	HHsearch (proba=100.00%)
Portal	12	lcl\|Aclame:protein:vir:78227\|NCBI_annot:gp11\|genbank:acc:YP_001491663;genbank:gi:157786487;genbank:G	HHsearch (proba=100.00%)
TermL	11	lcl\|Aclame:protein:vir:78228\|NCBI_annot:Putative	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	17	lcl\|Aclame:protein:vir:78254\|NCBI_annot:gp16\|genbank:acc:YP_001491668;genbank:gi:157786492;genbank:G	HHsearch (proba=100.00%)
Hc1	18	lcl\|Aclame:protein:vir:78288\|NCBI_annot:gp17\|genbank:acc:YP_001491669;genbank:gi:157786493;genbank:G	HHsearch (proba=100.00%)
Ne1	19	lcl\|Aclame:protein:vir:78298\|NCBI_annot:gp18\|genbank:acc:YP_001491670;genbank:gi:157786494;genbank:G	HHsearch (proba=100.00%)
Tc1	20	lcl\|Aclame:protein:vir:78292\|NCBI_annot:gp19\|genbank:acc:YP_001491671;genbank:gi:157786495;genbank:G	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:78223 protein:vir:78523 protein:vir:7771	Bethlehem U2 Bxz2	100 % 89 % 25 %
Portal	protein:vir:78537 protein:vir:78227 protein:vir:2427	U2 Bethlehem D29	100 % 100 % 44 %
TermL	protein:vir:78228 protein:vir:78494 protein:vir:2340	Bethlehem U2 Bxb1	100 % 95 % 78 %
Ad1	protein:vir:78478 protein:vir:78254 protein:vir:7773	U2 Bethlehem Bxz2	100 % 100 % 45 %
Hc1	protein:vir:78288 protein:vir:78529 protein:vir:2346	Bethlehem U2 Bxb1	100 % 99 % 87 %
Ne1	protein:vir:78503 protein:vir:78298 protein:vir:2347	U2 Bethlehem Bxb1	100 % 100 % 100 %
Tc1	protein:vir:78481 protein:vir:78292 protein:vir:2348	U2 Bethlehem Bxb1	100 % 100 % 99 %