Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 30 lcl|Aclame:protein:vir:9927|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Portal 25 lcl|Aclame:protein:vir:9922|NCBI_annot:hypothetical HHsearch (proba=100.00%)
TermL 24 lcl|Aclame:protein:vir:9921|NCBI_annot:putative Blast (e-value=0)
MTP 35 lcl|Aclame:protein:vir:9932|NCBI_annot:hypothetical Blast (e-value=1e-113)
Sheath NOT FOUND
Ad1 31 lcl|Aclame:protein:vir:9928|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Hc1 32 lcl|Aclame:protein:vir:9929|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ne1 33 lcl|Aclame:protein:vir:9930|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Tc1 34 lcl|Aclame:protein:vir:9931|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:9927
protein:vir:9875
protein:vir:106647
315.6
315.5
187
100 %
35 %
31 %
Portal protein:vir:9922
protein:vir:106639
protein:vir:103951
315.6
187
phiNM
100 %
34 %
32 %
TermL protein:vir:9921
protein:vir:103950
protein:vir:99776
315.6
phiNM
phiETA2
100 %
62 %
62 %
MTP protein:vir:9932
protein:vir:94505
protein:vir:5980
315.6
phiJL-1
SPP1
100 %
39 %
36 %
Ad1 protein:vir:9928
protein:vir:94507
protein:vir:3970
315.6
phiJL-1
ul36
100 %
37 %
33 %
Hc1 protein:vir:9929
protein:vir:94514
protein:vir:106629
315.6
phiJL-1
187
100 %
23 %
21 %
Ne1 protein:vir:9930
protein:vir:78858
protein:vir:103917
315.6
80alpha
phiNM
100 %
31 %
31 %
Tc1 protein:vir:9931
protein:vir:94547
protein:vir:2741
315.6
phiJL-1
O1205
100 %
19 %
18 %