Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 315.6 | Genbank acc : NC_004589 | Aclame index mge :178

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 51

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	30	lcl\|Aclame:protein:vir:9927\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Portal	25	lcl\|Aclame:protein:vir:9922\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
TermL	24	lcl\|Aclame:protein:vir:9921\|NCBI_annot:putative	Blast (e-value=0)
MTP	35	lcl\|Aclame:protein:vir:9932\|NCBI_annot:hypothetical	Blast (e-value=1e-113)
Sheath	NOT FOUND
Ad1	31	lcl\|Aclame:protein:vir:9928\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	32	lcl\|Aclame:protein:vir:9929\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	33	lcl\|Aclame:protein:vir:9930\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	34	lcl\|Aclame:protein:vir:9931\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:9927 protein:vir:9875 protein:vir:106647	315.6 315.5 187	100 % 35 % 31 %
Portal	protein:vir:9922 protein:vir:106639 protein:vir:103951	315.6 187 phiNM	100 % 34 % 32 %
TermL	protein:vir:9921 protein:vir:103950 protein:vir:99776	315.6 phiNM phiETA2	100 % 62 % 62 %
MTP	protein:vir:9932 protein:vir:94505 protein:vir:5980	315.6 phiJL-1 SPP1	100 % 39 % 36 %
Ad1	protein:vir:9928 protein:vir:94507 protein:vir:3970	315.6 phiJL-1 ul36	100 % 37 % 33 %
Hc1	protein:vir:9929 protein:vir:94514 protein:vir:106629	315.6 phiJL-1 187	100 % 23 % 21 %
Ne1	protein:vir:9930 protein:vir:78858 protein:vir:103917	315.6 80alpha phiNM	100 % 31 % 31 %
Tc1	protein:vir:9931 protein:vir:94547 protein:vir:2741	315.6 phiJL-1 O1205	100 % 19 % 18 %