Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : TM4 | Genbank acc : NC_003387 | Aclame index mge :53

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 89

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	9	lcl\|Aclame:protein:vir:2504\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	5	lcl\|Aclame:protein:vir:2500\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	4	lcl\|Aclame:protein:vir:2499\|NCBI_annot:putative	Blast (e-value=0)
MTP	14	lcl\|Aclame:protein:vir:2509\|NCBI_annot:major	Blast (e-value=1e-119)
Sheath	NOT FOUND
Ad1	10	lcl\|Aclame:protein:vir:2505\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	11	lcl\|Aclame:protein:vir:2506\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	12	lcl\|Aclame:protein:vir:2507\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	13	lcl\|Aclame:protein:vir:2508\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:2504 protein:vir:105905 protein:vir:94142	TM4 phiETA3 96	100 % 24 % 24 %
Portal	protein:vir:2500 protein:vir:104082 protein:vir:2427	TM4 Che12 D29	100 % 24 % 24 %
TermL	protein:vir:2499 protein:vir:99915 protein:vir:8315	TM4 Halo Corndog	100 % 57 % 40 %
MTP	protein:vir:2509 protein:vir:99926 protein:vir:94739	TM4 Halo phi LC3	100 % 62 % 29 %
Ad1	protein:vir:2505 protein:vir:9761 protein:vir:78478	TM4 315.3 U2	100 % 23 % 21 %
Hc1	protein:vir:2506 protein:vir:99923 protein:vir:8190	TM4 Halo Che9d	100 % 45 % 28 %
Ne1	protein:vir:2507 protein:vir:99924 protein:vir:94763	TM4 Halo phi LC3	100 % 35 % 32 %
Tc1	protein:vir:2508 protein:vir:99925 protein:vir:98426	TM4 Halo VWB	100 % 42 % 21 %