Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : LL-H | Genbank acc : NC_009554 | Aclame index mge :1873

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 48

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|Aclame:protein:vir:79712\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	4	lcl\|Aclame:protein:vir:79703\|NCBI_annot:minor	HHsearch (proba=100.00%)
TermL	NOT FOUND
MTP	11	lcl\|Aclame:protein:vir:79709\|NCBI_annot:main	Blast (e-value=3e-91)
Sheath	NOT FOUND
Ad1	8	lcl\|Aclame:protein:vir:79701\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	9	lcl\|Aclame:protein:vir:79686\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	10	lcl\|Aclame:protein:vir:79687\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79712 protein:vir:102335 protein:vir:78920	LL-H phi CD119 A006	100 % 22 % 22 %
Portal	protein:vir:79703 protein:vir:1587 protein:vir:98883	LL-H phig1e BCJA1c	100 % 46 % 38 %
MTP	protein:vir:79709 protein:vir:1579 protein:vir:98876	LL-H phig1e BCJA1c	100 % 41 % 20 %
Ad1	protein:vir:79701 protein:vir:9821 protein:vir:4788	LL-H 315.4 MM1	100 % 27 % 27 %
Hc1	protein:vir:79686 protein:vir:1582 protein:vir:98924	LL-H phig1e BCJA1c	100 % 45 % 23 %
Ne1	protein:vir:79687 protein:vir:1581 protein:vir:98892	LL-H phig1e BCJA1c	100 % 37 % 36 %