Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : RRH1 | Genbank acc : NC_016651

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 20

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|NC_016651.1_cdsid_YP_005087031.1	HHsearch (proba=100.00%)
Portal	4	lcl\|NC_016651.1_cdsid_YP_005087028.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_016651.1_cdsid_YP_005087026.1	Blast (e-value=2e-12)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	8	lcl\|NC_016651.1_cdsid_YP_005087032.1	HHsearch (proba=96.73%)
Hc1	NOT FOUND
Ne1	11	lcl\|NC_016651.1_cdsid_YP_005087035.1	HHsearch (proba=99.13%)
Tc1	9	lcl\|NC_016651.1_cdsid_YP_005087033.1	HHsearch (proba=91.66%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:8324 protein:vir:1638 protein:vir:94771	Corndog r1t phi LC3	17 % 17 % 17 %
Portal	protein:vir:6240 protein:vir:80333 protein:vir:1326	phi-BT1 phi644-2 phi-C31	19 % 18 % 18 %
TermL	protein:vir:108214 protein:vir:2499 protein:vir:80678	Giles TM4 PA6	21 % 21 % 20 %
Ad1	protein:vir:93592 protein:vir:100103 protein:vir:10365	phi 4795 phi1026b Xp10	22 % 18 % 14 %
Ne1	protein:vir:1332 protein:vir:6246 protein:vir:107757	phi-C31 phi-BT1 BcepB1A	26 % 24 % 20 %
Tc1	protein:vir:99226 protein:vir:79247 protein:vir:103883	DMS3 Phage MP22 D3112	19 % 19 % 18 %