Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : BcepB1A | Genbank acc : NC_005886 | Aclame index mge :1520

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 73

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	24	lcl\|Aclame:protein:vir:107732\|NCBI_annot:gp23\|genbank:acc:YP_024871;genbank:gi:48697513;genbank:Gene	HHsearch (proba=100.00%)
Portal	29	lcl\|Aclame:protein:vir:107742\|NCBI_annot:gp28\|genbank:acc:YP_024875;genbank:gi:48697517;genbank:Gene	HHsearch (proba=100.00%)
TermL	34	lcl\|Aclame:protein:vir:107748\|NCBI_annot:gp33	Blast (e-value=0)
MTP	NOT FOUND
Sheath	18	lcl\|Aclame:protein:vir:107720\|NCBI_annot:gp17\|genbank:acc:YP_024865;genbank:gi:48697507;genbank:Gene	HHsearch (proba=100.00%)
Ad1	22	lcl\|Aclame:protein:vir:107756\|NCBI_annot:gp21\|genbank:acc:YP_024869;genbank:gi:48697511;genbank:Gene	HHsearch (proba=100.00%)
Hc1	20	lcl\|Aclame:protein:vir:107716\|NCBI_annot:gp19\|genbank:acc:YP_024867;genbank:gi:48697509;genbank:Gene	HHsearch (proba=100.00%)
Ne1	21	lcl\|Aclame:protein:vir:107757\|NCBI_annot:gp20\|genbank:acc:YP_024868;genbank:gi:48697510;genbank:Gene	HHsearch (proba=100.00%)
Tc1	19	lcl\|Aclame:protein:vir:107715\|NCBI_annot:gp18\|genbank:acc:YP_024866;genbank:gi:48697508;genbank:Gene	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:107732 protein:vir:99576 protein:vir:96079	BcepB1A BcepF1 F8	100 % 42 % 39 %
Portal	protein:vir:107742 protein:vir:96068 protein:vir:99563	BcepB1A F8 BcepF1	100 % 40 % 39 %
TermL	protein:vir:107748 protein:vir:96067 protein:vir:99572	BcepB1A F8 BcepF1	100 % 21 % 21 %
Sheath	protein:vir:107720 protein:vir:99586 protein:vir:96104	BcepB1A BcepF1 F8	100 % 38 % 34 %
Ad1	protein:vir:107756 protein:vir:96108 protein:vir:99570	BcepB1A F8 BcepF1	100 % 46 % 45 %
Hc1	protein:vir:107716 protein:vir:99571 protein:vir:96107	BcepB1A BcepF1 F8	100 % 35 % 33 %
Ne1	protein:vir:107757 protein:vir:96105 protein:vir:99546	BcepB1A F8 BcepF1	100 % 28 % 27 %
Tc1	protein:vir:107715 protein:vir:99607 protein:vir:96106	BcepB1A BcepF1 F8	100 % 23 % 21 %