Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phi LC3 | Genbank acc : NC_005822 | Aclame index mge :1529

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 44

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	27	lcl\|Aclame:protein:vir:94771\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	23	lcl\|Aclame:protein:vir:94742\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	25	lcl\|Aclame:protein:vir:94734\|NCBI_annot:large	Blast (e-value=0)
MTP	33	lcl\|Aclame:protein:vir:94739\|NCBI_annot:major	Blast (e-value=1e-105)
Sheath	NOT FOUND
Ad1	29	lcl\|Aclame:protein:vir:94761\|NCBI_annot:unknown\|genbank:acc:NP_996708;genbank:gi:45597423;genbank:Ge	HHsearch (proba=100.00%)
Hc1	30	lcl\|Aclame:protein:vir:94767\|NCBI_annot:unknown\|genbank:acc:NP_996709;genbank:gi:45597424;genbank:Ge	HHsearch (proba=100.00%)
Ne1	31	lcl\|Aclame:protein:vir:94763\|NCBI_annot:unknown\|genbank:acc:NP_996710;genbank:gi:45597425;genbank:Ge	HHsearch (proba=100.00%)
Tc1	32	lcl\|Aclame:protein:vir:94768\|NCBI_annot:unknown\|genbank:acc:NP_996711;genbank:gi:45597426;genbank:Ge	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:94771 protein:vir:1638 protein:vir:9759	phi LC3 r1t 315.3	100 % 99 % 62 %
Portal	protein:vir:94742 protein:vir:1634 protein:vir:9568	phi LC3 r1t SM1	100 % 98 % 70 %
TermL	protein:vir:94734 protein:vir:1636 protein:vir:9572	phi LC3 r1t SM1	100 % 99 % 74 %
MTP	protein:vir:94739 protein:vir:1644 protein:vir:9580	phi LC3 r1t SM1	100 % 98 % 61 %
Ad1	protein:vir:94761 protein:vir:1640 protein:vir:9576	phi LC3 r1t SM1	100 % 96 % 74 %
Hc1	protein:vir:94767 protein:vir:1641 protein:vir:9762	phi LC3 r1t 315.3	100 % 98 % 71 %
Ne1	protein:vir:94763 protein:vir:1642 protein:vir:9763	phi LC3 r1t 315.3	100 % 100 % 67 %
Tc1	protein:vir:94768 protein:vir:1643 protein:vir:9764	phi LC3 r1t 315.3	100 % 99 % 63 %