Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 6 lcl|Aclame:protein:vir:1328|NCBI_annot:gp36|genbank:acc:NP_047927;swissprot:trembl:q9zwv6;genbank:gi HHsearch (proba=100.00%)
Portal 4 lcl|Aclame:protein:vir:1326|NCBI_annot:gp34|genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi HHsearch (proba=100.00%)
TermL 3 lcl|Aclame:protein:vir:1325|NCBI_annot:gp33|genbank:acc:NP_047924;swissprot:trembl:q9t214;genbank:gi Blast (e-value=0)
MTP 9 lcl|Aclame:protein:vir:1331|NCBI_annot:gp39|genbank:acc:NP_047930;swissprot:trembl:q9zxa8;genbank:gi Blast (e-value=0)
Sheath NOT FOUND
Ad1 7 lcl|Aclame:protein:vir:1329|NCBI_annot:gp37|genbank:acc:NP_047928;swissprot:trembl:q9zxb0;genbank:gi HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 10 lcl|Aclame:protein:vir:1332|NCBI_annot:gp40|genbank:acc:NP_047931;swissprot:trembl:q9zxa7;genbank:gi HHsearch (proba=100.00%)
Tc1 8 lcl|Aclame:protein:vir:1330|NCBI_annot:gp38|genbank:acc:NP_047929;swissprot:trembl:q9zxa9;genbank:gi HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:1328
protein:vir:6242
protein:vir:100247
phi-C31
phi-BT1
Bcep176
100 %
92 %
22 %
Portal protein:vir:1326
protein:vir:6240
protein:vir:8418
phi-C31
phi-BT1
Omega
100 %
93 %
32 %
TermL protein:vir:1325
protein:vir:6239
protein:vir:1883
phi-C31
phi-BT1
HK022
100 %
91 %
26 %
MTP protein:vir:1331
protein:vir:6245
protein:vir:78378
phi-C31
phi-BT1
SETP3
100 %
85 %
13 %
Ad1 protein:vir:1329
protein:vir:6243
protein:vir:103846
phi-C31
phi-BT1
D3112
100 %
92 %
15 %
Ne1 protein:vir:1332
protein:vir:6246
protein:vir:94654
phi-C31
phi-BT1
mu1/6
100 %
93 %
29 %
Tc1 protein:vir:1330
protein:vir:6244
phi-C31
phi-BT1
100 %
86 %