Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phi-C31 | Genbank acc : NC_001978 | Aclame index mge :28

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 53

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|Aclame:protein:vir:1328\|NCBI_annot:gp36\|genbank:acc:NP_047927;swissprot:trembl:q9zwv6;genbank:gi	HHsearch (proba=100.00%)
Portal	4	lcl\|Aclame:protein:vir:1326\|NCBI_annot:gp34\|genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi	HHsearch (proba=100.00%)
TermL	3	lcl\|Aclame:protein:vir:1325\|NCBI_annot:gp33\|genbank:acc:NP_047924;swissprot:trembl:q9t214;genbank:gi	Blast (e-value=0)
MTP	9	lcl\|Aclame:protein:vir:1331\|NCBI_annot:gp39\|genbank:acc:NP_047930;swissprot:trembl:q9zxa8;genbank:gi	Blast (e-value=0)
Sheath	NOT FOUND
Ad1	7	lcl\|Aclame:protein:vir:1329\|NCBI_annot:gp37\|genbank:acc:NP_047928;swissprot:trembl:q9zxb0;genbank:gi	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	10	lcl\|Aclame:protein:vir:1332\|NCBI_annot:gp40\|genbank:acc:NP_047931;swissprot:trembl:q9zxa7;genbank:gi	HHsearch (proba=100.00%)
Tc1	8	lcl\|Aclame:protein:vir:1330\|NCBI_annot:gp38\|genbank:acc:NP_047929;swissprot:trembl:q9zxa9;genbank:gi	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:1328 protein:vir:6242 protein:vir:100247	phi-C31 phi-BT1 Bcep176	100 % 92 % 22 %
Portal	protein:vir:1326 protein:vir:6240 protein:vir:8418	phi-C31 phi-BT1 Omega	100 % 93 % 32 %
TermL	protein:vir:1325 protein:vir:6239 protein:vir:1883	phi-C31 phi-BT1 HK022	100 % 91 % 26 %
MTP	protein:vir:1331 protein:vir:6245 protein:vir:78378	phi-C31 phi-BT1 SETP3	100 % 85 % 13 %
Ad1	protein:vir:1329 protein:vir:6243 protein:vir:103846	phi-C31 phi-BT1 D3112	100 % 92 % 15 %
Ne1	protein:vir:1332 protein:vir:6246 protein:vir:94654	phi-C31 phi-BT1 mu1/6	100 % 93 % 29 %
Tc1	protein:vir:1330 protein:vir:6244	phi-C31 phi-BT1	100 % 86 %