Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PA6 | Genbank acc : NC_009541 | Aclame index mge :1884

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 48

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|Aclame:protein:vir:80684\|NCBI_annot:gp6\|genbank:acc:YP_001285582;genbank:gi:148727088;genbank:Ge	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:80680\|NCBI_annot:gp3\|genbank:acc:YP_001285579;genbank:gi:148727085;genbank:Ge	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:80678\|NCBI_annot:gp2\|genbank:acc:YP_001285578;genbank:gi:148727084;genbank:Ge	Blast (e-value=0)
MTP	11	lcl\|Aclame:protein:vir:80670\|NCBI_annot:gp11\|genbank:acc:YP_001285587;genbank:gi:148727093;genbank:G	Blast (e-value=1e-123)
Sheath	NOT FOUND
Ad1	7	lcl\|Aclame:protein:vir:80668\|NCBI_annot:gp7\|genbank:acc:YP_001285583;genbank:gi:148727089;genbank:Ge	HHsearch (proba=100.00%)
Hc1	8	lcl\|Aclame:protein:vir:80661\|NCBI_annot:gp8\|genbank:acc:YP_001285584;genbank:gi:148727090;genbank:Ge	HHsearch (proba=100.00%)
Ne1	9	lcl\|Aclame:protein:vir:80665\|NCBI_annot:gp9\|genbank:acc:YP_001285585;genbank:gi:148727091;genbank:Ge	HHsearch (proba=100.00%)
Tc1	10	lcl\|Aclame:protein:vir:80662\|NCBI_annot:gp10\|genbank:acc:YP_001285586;genbank:gi:148727092;genbank:G	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:80684 protein:vir:8187 protein:vir:99920	PA6 Che9d Halo	100 % 39 % 33 %
Portal	protein:vir:80680 protein:vir:4223 protein:vir:7768	PA6 L5 Bxz2	100 % 28 % 27 %
TermL	protein:vir:80678 protein:vir:9572 protein:vir:2499	PA6 SM1 TM4	100 % 27 % 26 %
MTP	protein:vir:80670 protein:vir:9765 protein:vir:9580	PA6 315.3 SM1	100 % 26 % 25 %
Ad1	protein:vir:80668 protein:vir:99922 protein:vir:8189	PA6 Halo Che9d	100 % 43 % 35 %
Hc1	protein:vir:80661 protein:vir:81216 protein:vir:1641	PA6 BFK20 r1t	100 % 21 % 18 %
Ne1	protein:vir:80665 protein:vir:94763 protein:vir:1642	PA6 phi LC3 r1t	100 % 26 % 26 %
Tc1	protein:vir:80662	PA6	100 %