Query lcl|NC_016651.1_cdsid_YP_005087033.1 [gene=RoPhRRH1_gp09] [protein=hypothetical protein] [protein_id=YP_005087033.1] [location=6793..7125] Match_columns 110 No_of_seqs 6 out of 9 Neff 2.6 Searched_HMMs 1612 Date Thu Nov 7 12:37:15 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_9 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_9_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:99226 Length: 157 91.7 0.0068 4.2E-06 32.5 8.9 110 1-110 7-145 (157) 2 protein:vir:79247 Length: 157 91.6 0.0081 5E-06 32.1 9.3 110 1-110 7-145 (157) 3 protein:vir:103883 Length: 159 88.4 0.018 1.1E-05 30.1 8.5 109 1-110 9-147 (159) 4 protein:vir:1994 Length: 182 # 78.3 0.086 5.3E-05 26.4 7.7 110 1-110 1-134 (182) 5 protein:vir:488 Length: 187 # 70.4 0.21 0.00013 24.3 9.5 109 1-110 3-131 (187) 6 protein:vir:4461 Length: 186 # 69.6 0.22 0.00014 24.2 8.6 109 1-110 3-131 (186) 7 protein:vir:99874 Length: 154 68.1 0.12 7.6E-05 25.6 6.0 106 1-110 14-146 (154) 8 protein:vir:1643 Length: 111 # 62.0 0.34 0.00021 23.1 7.2 103 4-110 1-108 (111) 9 protein:vir:9579 Length: 111 # 48.7 0.66 0.00041 21.6 7.1 103 4-110 1-108 (111) 10 protein:vir:94768 Length: 111 48.5 0.67 0.00041 21.5 7.4 103 4-110 1-108 (111) 11 protein:vir:397 Length: 132 # 29.2 1.7 0.001 19.3 7.0 106 1-110 1-128 (132) 12 protein:vir:4515 Length: 186 # 26.0 2 0.0012 18.9 8.5 109 1-110 3-131 (186) No 1 >protein:vir:99226 Length: 157 # NCBI annotation: hypothetical protein # Family: family:all:2406 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950461;genbank:gi:119953662;genbank:GeneID:4643086 Probab=91.66 E-value=0.0068 Score=32.46 Aligned_cols=110 Identities=19% Similarity=0.109 Sum_probs=65.3 Q ss_pred ChhHHHHHHHHHhcC--C---cccccCcccc-----cCCcceeeeccCcc------ceecCc---eeEEEEEEEEe---- Q lcl|NC_016651. 1 MLAAVERIRDRIEQA--G---IRAVIDPRDI-----NPPCVWVTVDQLRD------TFLHGD---PEVDVRVTAIV---- 57 (110) Q Consensus 1 ~~aal~~I~D~l~~a--G---i~at~D~R~I-----~~P~awVtv~~l~~------~tL~g~---~~v~~~v~li~---- 57 (110) ++|+-+.|..||++. + |....|...| -.|+++|-..+.+- -...|. ....|.|.+++ T Consensus 7 ~~a~~~~IierLka~vp~l~~V~~aadla~i~~~~q~tPaayVi~~gd~~~~~~~~~~~~~~~Q~i~q~~~Vvlavr~~~ 86 (157) T protein:vir:99 7 YLFLEPLLIERIRSEVPGLAIVSGVPDLAALSEQDQPAPSVYVVYLGDEIGTGADHQGGRRAIQAIGQQWAVVLVVHYAD 86 (157) T ss_pred hhhhhHHHHHHHHhhhhHHHhhhcccchHHHhhccCCCcEEEEEecccccCCCcccccccceeeeeeeeEEEEEEEeccc Confidence 667777777777643 1 2222233222 34999998877642 122222 44889999999 Q ss_pred cCCCCccchHHHHHHHHHHHHHhccCC--Cccccceeec----CCccccccceeeeeeC Q lcl|NC_016651. 58 PDNGHRVALANLSDLVDQLLASGIVFD--QPIEPEAVTL----PSGGSALPAMKLVTTV 110 (110) Q Consensus 58 pD~G~~~~L~~lgelidqa~as~g~~~--e~ve~~~~~~----P~~G~~~PA~~~~~ti 110 (110) .++|+.+.++.+|||+.+.++.|-+.- +...+.+.+. +.|-..+==..+.|++ T Consensus 87 ~~~~g~~a~d~ag~ll~~v~~AL~GW~P~~~~~pl~~~~~~~~~~y~~gf~yypl~F~~ 145 (157) T protein:vir:99 87 SSNSGEGARREAGPLLGRLVKALTGWAPAIDVAPLARSARQSPVTYASGYFYFPLVFTA 145 (157) T ss_pred cccccchhHHHHHHHHHHHHHHhcCCcCcccCCceeeeecCCcccccCceEEEEEEEEE Confidence 457888899999999999998887773 2244443321 1122222122344444 No 2 >protein:vir:79247 Length: 157 # NCBI annotation: hypothetical protein # Family: family:all:2406 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469166;genbank:gi:157835008;genbank:GeneID:5648828 Probab=91.61 E-value=0.0081 Score=32.06 Aligned_cols=110 Identities=19% Similarity=0.108 Sum_probs=64.5 Q ss_pred ChhHHHHHHHHHhcC--Cc---cccc-----CcccccCCcceeeeccCcc------ceecCc---eeEEEEEEEEe---- Q lcl|NC_016651. 1 MLAAVERIRDRIEQA--GI---RAVI-----DPRDINPPCVWVTVDQLRD------TFLHGD---PEVDVRVTAIV---- 57 (110) Q Consensus 1 ~~aal~~I~D~l~~a--Gi---~at~-----D~R~I~~P~awVtv~~l~~------~tL~g~---~~v~~~v~li~---- 57 (110) ++|+-+.|..+|.+. ++ .... .-++--.|++||-....+- ..-++. ....|.|.+++ T Consensus 7 ~~a~~~~IierLka~v~~l~~V~~aadla~i~e~~q~tPaayVv~~gd~~~~~~~~~~~~~~~Q~vtq~f~Vvlavrn~~ 86 (157) T protein:vir:79 7 YLFLEPLLIERIRSEVPGLAIVSGVPDLAALSEQDQPAPSVYVVYLGDEIGTGADYQGGRRAIQAIGQQWAVVLVVHYAD 86 (157) T ss_pred hhhhhHHHHHHHHhhhhhhhhhccccchhhhhhhcCCCcEEEEEecccccCCCcccccCcceeeeeeeeEEEEEEEeccc Confidence 677777777777643 11 1122 2232335999997666522 111222 34889999997 Q ss_pred cCCCCccchHHHHHHHHHHHHHhccCC--Cccccceeec----CCccccccceeeeeeC Q lcl|NC_016651. 58 PDNGHRVALANLSDLVDQLLASGIVFD--QPIEPEAVTL----PSGGSALPAMKLVTTV 110 (110) Q Consensus 58 pD~G~~~~L~~lgelidqa~as~g~~~--e~ve~~~~~~----P~~G~~~PA~~~~~ti 110 (110) .+.|+.+..+++|+|+.+.++.|-++- +...+.+.+. +.|-..+==..+.|++ T Consensus 87 ~~~~~~a~~d~ag~ll~~v~~AL~GW~P~~~~~pl~~~~~~~~~~y~~gf~yypl~F~~ 145 (157) T protein:vir:79 87 SSNSGEGARREAGPLLGRLVKALTGWAPAIDVAPLARSARQSPVTYASGYFYFPLVFTA 145 (157) T ss_pred cccccchhHHHHHHHHHHHHHHhcCccccccCCceeeeecCCcccccCCeEEEEEEEEE Confidence 567888889999999999998887763 2244444331 1222222222344444 No 3 >protein:vir:103883 Length: 159 # NCBI annotation: hypothetical protein # Family: family:all:2406 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938246;genbank:gi:38229151;genbank:GeneID:2648198 Probab=88.41 E-value=0.018 Score=30.13 Aligned_cols=109 Identities=18% Similarity=0.098 Sum_probs=65.3 Q ss_pred ChhHHHHHHHHHhcC--C---------cccccCcccccCCcceeeeccCcc------ceecCc---eeEEEEEEEEecC- Q lcl|NC_016651. 1 MLAAVERIRDRIEQA--G---------IRAVIDPRDINPPCVWVTVDQLRD------TFLHGD---PEVDVRVTAIVPD- 59 (110) Q Consensus 1 ~~aal~~I~D~l~~a--G---------i~at~D~R~I~~P~awVtv~~l~~------~tL~g~---~~v~~~v~li~pD- 59 (110) ++|+-+.|.+||++. | ..+..--|++ .||++|-.++.+- ..-+|. ....|.|.++|-. T Consensus 9 ~lav~~~IieRLka~v~~lr~V~~aadla~i~el~q~-tPaayV~~~g~~~~~~~~~~~~~~~~q~v~q~w~Vvlavr~~ 87 (159) T protein:vir:10 9 YLFLETLLVERIRAEVPGLQDVSGVPDLATLDEQRQG-SPCVYVVYLGDEIGTGASHQGGSRAIQTVTQHWAAVLTLYYA 87 (159) T ss_pred hhhhhHHHHHHHHhhhhHHHhhhcccchHHHHhhhCC-CcEEEEEecccccCCCcccccccceeeeeeeEEEEEEEEecc Confidence 677777777777643 2 3333333453 5999999887751 222333 3378999998853 Q ss_pred ---CCCccchHHHHHHHHHHHHHhccCC--CccccceeecC----CccccccceeeeeeC Q lcl|NC_016651. 60 ---NGHRVALANLSDLVDQLLASGIVFD--QPIEPEAVTLP----SGGSALPAMKLVTTV 110 (110) Q Consensus 60 ---~G~~~~L~~lgelidqa~as~g~~~--e~ve~~~~~~P----~~G~~~PA~~~~~ti 110 (110) +|+++-.++.|||+.+.++.+-++. +...|.+.+.. .|-...==..+.|++ T Consensus 88 ~~q~~~~a~~d~aG~ll~~v~~AL~GW~P~~~~~Pl~r~~~~~~~~y~~gfayyPl~F~~ 147 (159) T protein:vir:10 88 DAQGDGQGARREAGPLLGRLLKALTGWVPDQGVTPLARSPQASPVSYSNGFFYFPLVFTA 147 (159) T ss_pred cccCccchhhHHHHHHHHHHHHHhcCcccCCcCCCeeecccCCCccccCCEEEeeeeEEe Confidence 3455666689999999998887765 33455554422 233222222344444 No 4 >protein:vir:1994 Length: 182 # NCBI annotation: Hypothetical protein # Family: family:all:1387 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050641;genbank:gi:9633528;genbank:GeneID:2636286 Probab=78.29 E-value=0.086 Score=26.43 Aligned_cols=110 Identities=16% Similarity=0.163 Sum_probs=51.4 Q ss_pred ChhHHHH-HHHHHhcC------------CcccccCccc--ccCCcceeeeccCccceecCceeEEEEEEEEecC-CCCcc Q lcl|NC_016651. 1 MLAAVER-IRDRIEQA------------GIRAVIDPRD--INPPCVWVTVDQLRDTFLHGDPEVDVRVTAIVPD-NGHRV 64 (110) Q Consensus 1 ~~aal~~-I~D~l~~a------------Gi~at~D~R~--I~~P~awVtv~~l~~~tL~g~~~v~~~v~li~pD-~G~~~ 64 (110) |.+++|+ |.++|.+. |=+-..+.+. .++|++||+.-...+..=-+....++.||.++-+ +|..+ T Consensus 1 mI~~iEdAi~~rl~~~~g~~v~~V~sy~Gefd~e~l~~~~~~~PAv~Va~~G~~~~~~r~~~~~r~~v~V~a~~~~g~~~ 80 (182) T protein:vir:19 1 MLEETEAALLARVRELFGATLRQVEPLTGTWTNEDVHRLFLAPPSVFLAWMGCGEGRTRREVESRWAFFVVAELLNGEPV 80 (182) T ss_pred ChHHHHHHHHHHHHHHhhhhhhhhccCCCCCChhhhhHhhhcCceeEEEeccccCcCCceeeeeEEEEEEEecCCCChhh Confidence 5555543 34444332 2222334553 5899999997654433322334478889888877 45445 Q ss_pred chHHHHHHHHHHHHHhccCCC----ccccceee-c---CCccccccceeeeeeC Q lcl|NC_016651. 65 ALANLSDLVDQLLASGIVFDQ----PIEPEAVT-L---PSGGSALPAMKLVTTV 110 (110) Q Consensus 65 ~L~~lgelidqa~as~g~~~e----~ve~~~~~-~---P~~G~~~PA~~~~~ti 110 (110) .-...-+||+.+.+.+-+..- +.+|..+. + .--+..+=.+-+.+.. T Consensus 81 ~rvG~y~lv~~v~~lL~~q~~g~~~~l~p~~vrnL~s~~~~~~gvsvyavef~~ 134 (182) T protein:vir:19 81 NRPGIYQIVERLIAGVNGQTFGPTTGMRLTQVRNLCDDNRINAGVVLYGVLFSG 134 (182) T ss_pred hhhhHHHHHHHHHHHHhccCCCCccccccceeeeeechhhhhCceEEEEEEeec Confidence 445566899888766643211 11111110 0 0000000011111111 No 5 >protein:vir:488 Length: 187 # NCBI annotation: hypothetical protein # Family: family:all:964 # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543095;swissprot:trembl:q8w624;genbank:gi:18249907;uniprot:Q8W624;genbank:GeneID:929697 Probab=70.44 E-value=0.21 Score=24.31 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=63.4 Q ss_pred ChhHHHHHH-------HH-HhcCCcccccCcccccCCcceeeeccCccc--eecCce----eEEEEEEEEec---C-CCC Q lcl|NC_016651. 1 MLAAVERIR-------DR-IEQAGIRAVIDPRDINPPCVWVTVDQLRDT--FLHGDP----EVDVRVTAIVP---D-NGH 62 (110) Q Consensus 1 ~~aal~~I~-------D~-l~~aGi~at~D~R~I~~P~awVtv~~l~~~--tL~g~~----~v~~~v~li~p---D-~G~ 62 (110) +-.-++++. ++ -.++..-+..+.++...|+|||-..+..-- --.|.| ..++.|.+++. | .|. T Consensus 3 l~~Ii~rLra~vP~l~grV~gaad~aal~~~~~lp~PaAyVlp~~d~~~~~~sq~~~~Q~i~e~f~Vvl~vrn~~D~~G~ 82 (187) T protein:vir:48 3 LTTIIAALRERCPRFEDRVGGAAQFKAIPDAGKLRLPAAYVVPSDDAPGEQKSQTDYWQDLTEGFSVIVVLSNERDEKGQ 82 (187) T ss_pred hhHHHHHHHHhcchhhhhhhhhhhhhhhhhhcCCCCceEEEEeccccCCCCCCCcceeeeeeeEEEEEEEEeccCCCCCc Confidence 222222332 22 234467777888899999999988765422 222333 26677777773 4 555 Q ss_pred ccchHHHHHHHHHHHHHhccCCCccccceeecCCcccccc--ceeeeeeC Q lcl|NC_016651. 63 RVALANLSDLVDQLLASGIVFDQPIEPEAVTLPSGGSALP--AMKLVTTV 110 (110) Q Consensus 63 ~~~L~~lgelidqa~as~g~~~e~ve~~~~~~P~~G~~~P--A~~~~~ti 110 (110) ..+++.|.+++.++.+.|.+..-+=....+...+ |..+. +-.+.|.. T Consensus 83 ~~a~D~l~~lr~~v~~AL~GW~P~~~~~pi~~~g-G~lvd~~~g~l~y~~ 131 (187) T protein:vir:48 83 WAAYDAVHDVRRELWKALLGWMPDPQGGEIVYAG-GTLLDLNRYELYYQF 131 (187) T ss_pred chhhHHHHHHHHHHHHHHhCcCcCCCCceEEEcC-ceEeeecCcEEEEEE Confidence 5679999999999998887775443333333333 32222 22233333 No 6 >protein:vir:4461 Length: 186 # NCBI annotation: hypothetical protein # Family: family:all:964 # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700384;genbank:gi:23505456;genbank:GeneID:955663 Probab=69.65 E-value=0.22 Score=24.19 Aligned_cols=109 Identities=15% Similarity=0.248 Sum_probs=61.6 Q ss_pred ChhHHHHHHHH---Hh-----cCCcccccCcccccCCcceeeeccCccceec--Cce----eEEEEEEEEe---cC-CCC Q lcl|NC_016651. 1 MLAAVERIRDR---IE-----QAGIRAVIDPRDINPPCVWVTVDQLRDTFLH--GDP----EVDVRVTAIV---PD-NGH 62 (110) Q Consensus 1 ~~aal~~I~D~---l~-----~aGi~at~D~R~I~~P~awVtv~~l~~~tL~--g~~----~v~~~v~li~---pD-~G~ 62 (110) +-.-++|+.+. |+ ++..-+..+.++...|+|||-+.....---. |.| ..++.|.+++ .| .|. T Consensus 3 l~~Vi~RLra~vP~l~~rV~gaad~aai~~~~~lp~PaAyVip~~d~~g~~~s~g~~~Q~i~~~f~Vvl~vrn~~d~~G~ 82 (186) T protein:vir:44 3 LTPIIAALRSRCPRFENRVGGAAQFKAIPEAGKLRLPAAYVVPAEDVTGEQKSQTDYWQDLTEGFSVIVVLSNERDEKGQ 82 (186) T ss_pred hhHHHHHHHHhcchhhhhhhhhhhhhhhhhhcCCCCceEEEEeccccCCCCCcccceeEeeeeeEEEEEEEeccCCCCCC Confidence 22222233221 32 4567778888999999999998766432222 433 2667788876 35 566 Q ss_pred ccchHHHHHHHHHHHHHhccCCCccccceeecCCccccccc--eeeeeeC Q lcl|NC_016651. 63 RVALANLSDLVDQLLASGIVFDQPIEPEAVTLPSGGSALPA--MKLVTTV 110 (110) Q Consensus 63 ~~~L~~lgelidqa~as~g~~~e~ve~~~~~~P~~G~~~PA--~~~~~ti 110 (110) ..+++.|.+++.++.+.|-++.-+=.-..+..= .|.-+-. -.+.|.. T Consensus 83 ~aa~D~l~~lr~~v~~AL~GW~P~~~~~pi~~~-gG~lvd~~~g~l~y~~ 131 (186) T protein:vir:44 83 WASYDAVHDVRQEIWKALLGWEPDSQVHEIQYA-GGMLLDLNRHELYYQF 131 (186) T ss_pred ccchHHHHHHHHHHHHHHcCcCcCCCCceEEEc-CceEEeecCcEEEEEE Confidence 677999999999998777776433222222221 2322222 1222222 No 7 >protein:vir:99874 Length: 154 # NCBI annotation: hypothetical protein # Family: family:all:964 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164078;genbank:gi:56692610;genbank:GeneID:3192602 Probab=68.11 E-value=0.12 Score=25.58 Aligned_cols=106 Identities=17% Similarity=0.220 Sum_probs=60.8 Q ss_pred ChhHHH----HHHHHHhcCCcccccCcccccCCcceeeecc--Cccc-e--ecCc----eeEEEEEEEEe---cCCCCcc Q lcl|NC_016651. 1 MLAAVE----RIRDRIEQAGIRAVIDPRDINPPCVWVTVDQ--LRDT-F--LHGD----PEVDVRVTAIV---PDNGHRV 64 (110) Q Consensus 1 ~~aal~----~I~D~l~~aGi~at~D~R~I~~P~awVtv~~--l~~~-t--L~g~----~~v~~~v~li~---pD~G~~~ 64 (110) +.+.|| +...--.++..-+..|-++...|+|||-+.+ ..+. . -.|. ...++.|.+++ -|.-+.. T Consensus 14 Vi~RLra~~p~l~~V~gaadlAal~~~~~~p~PaAyVlp~~d~~~~~~~~~~~g~~~Q~i~~~f~Vvl~v~~~~d~~G~~ 93 (154) T protein:vir:99 14 VIERLRDQVKVLKHVGGAAELGTITQLRDFRTPAAYVLLAQETLSPKPAGHAGGATRQMANVHFAITVAVRNYRDNKGVT 93 (154) T ss_pred HHHHHHHhCcchhhhhhhhhhhhhhhhcCCCCceEEEEecccccCCCCCCccccceeeeeeeEEEEEEEeeccCcccchh Confidence 222222 2221123345667778889999999999886 2222 1 1222 34677777774 4777778 Q ss_pred chHHHHHHHHHHHHHhccCCCcc----ccceeecCCccccccc---eee----eeeC Q lcl|NC_016651. 65 ALANLSDLVDQLLASGIVFDQPI----EPEAVTLPSGGSALPA---MKL----VTTV 110 (110) Q Consensus 65 ~L~~lgelidqa~as~g~~~e~v----e~~~~~~P~~G~~~PA---~~~----~~ti 110 (110) ++..|.+++.++.+.|-++--+- ++-+.. |+++-- -.+ .|++ T Consensus 94 a~d~l~~lr~~v~~AL~GW~P~~~~G~~pi~~~----gG~l~d~~~g~l~y~~~F~~ 146 (154) T protein:vir:99 94 AADDLRPVLGDVRKALIGWTPPGLAGARDCQLV----QGQVVDYDASVLIWTDLYQT 146 (154) T ss_pred hHHHHHHHHHHHHHHHhCCCCCcccCCceeeec----CcceeeccCcEEEEeeeeee Confidence 99999999999998887775332 222222 233322 222 3333 No 8 >protein:vir:1643 Length: 111 # NCBI annotation: hypothetical protein # Family: family:all:1269 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695064;genbank:gi:23455755;genbank:GeneID:955492 Probab=61.95 E-value=0.34 Score=23.13 Aligned_cols=103 Identities=8% Similarity=0.134 Sum_probs=70.6 Q ss_pred HHHH-HHHHHhcC-CcccccCcccccCCcceeeeccCccceecCceeEEEEEEEEecCCCCccchHHHHHHHHHHHHHhc Q lcl|NC_016651. 4 AVER-IRDRIEQA-GIRAVIDPRDINPPCVWVTVDQLRDTFLHGDPEVDVRVTAIVPDNGHRVALANLSDLVDQLLASGI 81 (110) Q Consensus 4 al~~-I~D~l~~a-Gi~at~D~R~I~~P~awVtv~~l~~~tL~g~~~v~~~v~li~pD~G~~~~L~~lgelidqa~as~g 81 (110) -+|+ |.+.|.+. ||++-.+. .=+.|+-||+|.+.-..-.+.....+.+|.--++=.. .-..|.+.|.++|..+- T Consensus 1 miE~~i~~~L~~~l~Vpv~~e~-p~~~P~~FV~vErtGG~~~~~~~~~~lAVq~w~~S~~---eAa~La~~v~~~l~~l~ 76 (111) T protein:vir:16 1 MIEIIIKNFLDTHLSVSSFLEK-KGEMPLSYILFEKTGSSKSNHLLSSTFAFQSYAPSMY---EAAKLNEQLKEVVERLI 76 (111) T ss_pred ChHHhHHHHHhhcCCceeEeec-CCCCCCceEEEEecCCccccccccceEEEEecchhHH---HHHHHHHHHHHHHhhcc Confidence 4444 44557777 99999987 4466999999999988877766667777777665443 44567788988886653 Q ss_pred cCC--Cccccce-eecCCccccccceeeeeeC Q lcl|NC_016651. 82 VFD--QPIEPEA-VTLPSGGSALPAMKLVTTV 110 (110) Q Consensus 82 ~~~--e~ve~~~-~~~P~~G~~~PA~~~~~ti 110 (110) .-+ -.|++|. ...|....|=|---+++.| T Consensus 77 ~~~~I~av~~~s~ynf~d~~tk~~RYQav~~i 108 (111) T protein:vir:16 77 ELNEISNVSLNSDYNFTDTETKEYRYQAVFDI 108 (111) T ss_pred ccccceeeecCCCCcCCCCCCCCceEEEEEEE Confidence 222 1233332 2345556778888888888 No 9 >protein:vir:9579 Length: 111 # NCBI annotation: gp45 # Family: family:all:1269 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862884;genbank:gi:32469476;genbank:GeneID:1461321 Probab=48.69 E-value=0.66 Score=21.57 Aligned_cols=103 Identities=11% Similarity=0.131 Sum_probs=68.4 Q ss_pred HHHHHHHH-HhcC-CcccccCcccccCCcceeeeccCccceecCceeEEEEEEEEecCCCCccchHHHHHHHHHHHHHhc Q lcl|NC_016651. 4 AVERIRDR-IEQA-GIRAVIDPRDINPPCVWVTVDQLRDTFLHGDPEVDVRVTAIVPDNGHRVALANLSDLVDQLLASGI 81 (110) Q Consensus 4 al~~I~D~-l~~a-Gi~at~D~R~I~~P~awVtv~~l~~~tL~g~~~v~~~v~li~pD~G~~~~L~~lgelidqa~as~g 81 (110) -+|++.-. |+.. |+++-.+.-.=+ |+-||+|.+.-..-.+.....+.+|.--++=. ..-..|.+.|.++|..+- T Consensus 1 miE~~v~~~L~~~l~vpv~~~vp~~~-P~~FV~vErtGG~~~~~~~~p~laVq~wg~S~---~~Aa~La~~v~~a~~~l~ 76 (111) T protein:vir:95 1 MIEIIINKYLDGHLDVPSFFEHEAEA-PDSFVIIQKTGGKERNHSGSATFAFQSYAPTM---QKAAELNVKVKSAVKGLI 76 (111) T ss_pred ChHHhHHHHhhhhcCeeEEeecCCCC-CCceEEEEeeCCccccccccceEEEEeccccH---HHHHHHHHHHHHHHhhhh Confidence 45554433 5444 999988843322 79999999998887777766777777665533 344556677888886663 Q ss_pred cCCC--ccccce-eecCCccccccceeeeeeC Q lcl|NC_016651. 82 VFDQ--PIEPEA-VTLPSGGSALPAMKLVTTV 110 (110) Q Consensus 82 ~~~e--~ve~~~-~~~P~~G~~~PA~~~~~ti 110 (110) +.++ .|+++. ...|....+-|---+++.| T Consensus 77 ~~~~i~~v~~~s~ynf~d~~tk~~RYQ~~~~i 108 (111) T protein:vir:95 77 ELDSICGVHLNSDYNFTDTETKQYRYQAVFDI 108 (111) T ss_pred ccccccccccCCccccCCCCCCCceEEEEEEE Confidence 3322 234443 3456677789998888888 No 10 >protein:vir:94768 Length: 111 # NCBI annotation: unknown # Family: family:all:1269 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996711;genbank:gi:45597426;genbank:GeneID:2769040 Probab=48.48 E-value=0.67 Score=21.54 Aligned_cols=103 Identities=9% Similarity=0.135 Sum_probs=72.2 Q ss_pred HHHHH-HHHHhcC-CcccccCcccccCCcceeeeccCccceecCceeEEEEEEEEecCCCCccchHHHHHHHHHHHHHhc Q lcl|NC_016651. 4 AVERI-RDRIEQA-GIRAVIDPRDINPPCVWVTVDQLRDTFLHGDPEVDVRVTAIVPDNGHRVALANLSDLVDQLLASGI 81 (110) Q Consensus 4 al~~I-~D~l~~a-Gi~at~D~R~I~~P~awVtv~~l~~~tL~g~~~v~~~v~li~pD~G~~~~L~~lgelidqa~as~g 81 (110) -+|++ .+.|.+. ||++-.|. .=+.|+-||+|.+.-..-.+.......+|.--++=.. .-..|.+.|.++|..+- T Consensus 1 miE~~v~~~L~~~l~vpv~~e~-p~~~p~~FV~vErtGG~~~~~~~~~~lAVQ~~~~S~~---eAa~La~~v~~~~~~l~ 76 (111) T protein:vir:94 1 MIEIIIKNFLDTHLSVSSFLEK-KGEMPLSYVLFEKTGSSKSNHLLSSTFAFQSYAPSMY---EAAKLNEQLKEVVERLI 76 (111) T ss_pred ChHHhHHHHHhhcCCcceEeec-CCCCCCceEEEEecCCccccccccceEEEEecchhHH---HHHHHHHHHHHHHhhcc Confidence 44544 4557777 99999987 4467999999999988887777777788877766444 44567788888886552 Q ss_pred cCC--Cccccce-eecCCccccccceeeeeeC Q lcl|NC_016651. 82 VFD--QPIEPEA-VTLPSGGSALPAMKLVTTV 110 (110) Q Consensus 82 ~~~--e~ve~~~-~~~P~~G~~~PA~~~~~ti 110 (110) .-+ -.|++|. ...|....|=|.--+++.| T Consensus 77 ~~~~i~~v~~~s~Ynf~d~~tk~~RYQav~~i 108 (111) T protein:vir:94 77 ELNEISNVSLNSDYNFTDTETKEYRYQAVFDI 108 (111) T ss_pred cccccceeecCCCcccCCCcCCCceEEEEEEE Confidence 221 1233333 3456666788888899888 No 11 >protein:vir:397 Length: 132 # NCBI annotation: gp12 # Family: family:all:911 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046907;genbank:gi:9630477;genbank:GeneID:1261651 Probab=29.21 E-value=1.7 Score=19.35 Aligned_cols=106 Identities=18% Similarity=0.147 Sum_probs=64.2 Q ss_pred Chh--HHHHHHHHHhcC---------CcccccCcccccCCcceeeec--cCccceecCc-ee--EEEEEEEEecCCCCcc Q lcl|NC_016651. 1 MLA--AVERIRDRIEQA---------GIRAVIDPRDINPPCVWVTVD--QLRDTFLHGD-PE--VDVRVTAIVPDNGHRV 64 (110) Q Consensus 1 ~~a--al~~I~D~l~~a---------Gi~at~D~R~I~~P~awVtv~--~l~~~tL~g~-~~--v~~~v~li~pD~G~~~ 64 (110) |-. -=|+++|+|++. |-++.+|.. ++|-.=|-++ +-+.++|+++ .+ .-.+|||-+ +. ..+ T Consensus 1 ~~ht~IR~~Vid~L~~~l~~~~~ffdGrP~fiDe~--elPAVAV~l~d~~~~~~~ld~~~w~A~LhI~iyLka-~~-~ds 76 (132) T protein:vir:39 1 MKHRDIRKVIIDALESAIGTDAIYFDGRPAVLEEG--DFPAVAVYLTDAEYTGEELDADTWQAILHIEVFLEA-QV-PDS 76 (132) T ss_pred CchHHHHHHHHHHHHhhCCCceEEecCcceeeccc--cCcEEEEEeecCCCCcceecCCeeEEEEEEEEEeec-CC-CHH Confidence 322 124677888776 889999944 6786555554 5567899986 55 677888877 45 488 Q ss_pred chHHHHH-HHHHHHHHh---ccCCCccccceeecCC--ccccccceeeeeeC Q lcl|NC_016651. 65 ALANLSD-LVDQLLASG---IVFDQPIEPEAVTLPS--GGSALPAMKLVTTV 110 (110) Q Consensus 65 ~L~~lge-lidqa~as~---g~~~e~ve~~~~~~P~--~G~~~PA~~~~~ti 110 (110) .|+.+.| +|..++.+. ....+.+.+....-.+ -.+..=++.|.|+| T Consensus 77 ~LD~~aE~~i~p~i~~~~~l~~l~~~~~~~gy~Y~rD~~~atW~sadL~y~I 128 (132) T protein:vir:39 77 ELDDWMETRVYPVLAEVPGLESLITTMVQQGYDYQRDDDMALWSSADLKYSI 128 (132) T ss_pred HHHHHHHHHhHhhhcccchhhhHhhhhhhcCCCcccccccceEEEEEEEEEE Confidence 9999988 766665443 3333433332111111 12223345777777 No 12 >protein:vir:4515 Length: 186 # NCBI annotation: unknown # Family: family:all:964 # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599041;genbank:gi:19548999;genbank:GeneID:935225 Probab=26.01 E-value=2 Score=18.94 Aligned_cols=109 Identities=17% Similarity=0.276 Sum_probs=60.8 Q ss_pred ChhHHHHHHHH---Hh-----cCCcccccCcccccCCcceeeeccCc--cceecCce-e---EEEEEEEEec---C-CCC Q lcl|NC_016651. 1 MLAAVERIRDR---IE-----QAGIRAVIDPRDINPPCVWVTVDQLR--DTFLHGDP-E---VDVRVTAIVP---D-NGH 62 (110) Q Consensus 1 ~~aal~~I~D~---l~-----~aGi~at~D~R~I~~P~awVtv~~l~--~~tL~g~~-~---v~~~v~li~p---D-~G~ 62 (110) +-.-++++... |+ ++-.-+..+-++...|+|||-..... +.--.|.+ + .++.|.+++- | .|. T Consensus 3 l~~Ii~RLra~vP~l~grV~gaad~a~l~~~~~lp~PaAyVip~~d~~~~~~sq~~~~Q~i~e~f~Vvl~vrn~~d~~G~ 82 (186) T protein:vir:45 3 LTPVIAALRARCPYFENRVAGAAQFKNLPEVGKLRLPAAYVVPGDDSPGENKSQTDYWQELKEGFSVVVILSNGRDERGQ 82 (186) T ss_pred hHHHHHHHHHhcchhhchhhhhhhhhhhHhhcCCCCceEEEEecccccCCCccccceeeeeeeEEEEEEEEeccCCCCCc Confidence 22223333322 22 44556667778888999999887654 33333443 2 6677777773 4 555 Q ss_pred ccchHHHHHHHHHHHHHhccCCCccccceeecCCcccccc--ceeeeeeC Q lcl|NC_016651. 63 RVALANLSDLVDQLLASGIVFDQPIEPEAVTLPSGGSALP--AMKLVTTV 110 (110) Q Consensus 63 ~~~L~~lgelidqa~as~g~~~e~ve~~~~~~P~~G~~~P--A~~~~~ti 110 (110) ..+++.|.+++.++.+.|-++.-+=.-..+..= .|.-+- +-.++|.. T Consensus 83 ~aa~D~l~~lr~~v~~AL~GW~P~~~~~pi~~~-gG~lvd~~~g~l~y~~ 131 (186) T protein:vir:45 83 FASYDVVDDVRQMLFKALLGWNPEACGNPITYD-GGTLLDLNRHELIYQF 131 (186) T ss_pred ccchhHHHHHHHHHHHHHhCcccCCCCceEEEc-CceEEeecCcEEEEEE Confidence 567899999999998887776433222222221 222222 22233333 Done!