Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Xp10 | Genbank acc : NC_004902 | Aclame index mge :183

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 60

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	9	lcl\|Aclame:protein:vir:10364\|NCBI_annot:head	HHsearch (proba=100.00%)
Portal	7	lcl\|Aclame:protein:vir:10362\|NCBI_annot:head	HHsearch (proba=100.00%)
TermL	6	lcl\|Aclame:protein:vir:10361\|NCBI_annot:terminase	Blast (e-value=0)
MTP	14	lcl\|Aclame:protein:vir:10369\|NCBI_annot:conserved	Blast (e-value=1e-118)
Sheath	NOT FOUND
Ad1	10	lcl\|Aclame:protein:vir:10365\|NCBI_annot:conserved	HHsearch (proba=100.00%)
Hc1	11	lcl\|Aclame:protein:vir:10366\|NCBI_annot:conserved	HHsearch (proba=100.00%)
Ne1	12	lcl\|Aclame:protein:vir:10367\|NCBI_annot:conserved	HHsearch (proba=100.00%)
Tc1	13	lcl\|Aclame:protein:vir:10368\|NCBI_annot:conserved	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:10364 protein:vir:81070 protein:vir:97053	Xp10 Xop411 OP1	100 % 98 % 98 %
Portal	protein:vir:10362 protein:vir:81072 protein:vir:97060	Xp10 Xop411 OP1	100 % 99 % 99 %
TermL	protein:vir:10361 protein:vir:81073 protein:vir:97071	Xp10 Xop411 OP1	100 % 94 % 83 %
MTP	protein:vir:10369 protein:vir:97081 protein:vir:81065	Xp10 OP1 Xop411	100 % 92 % 90 %
Ad1	protein:vir:10365 protein:vir:81069 protein:vir:97069	Xp10 Xop411 OP1	100 % 96 % 90 %
Hc1	protein:vir:10366 protein:vir:97076 protein:vir:81068	Xp10 OP1 Xop411	100 % 98 % 97 %
Ne1	protein:vir:10367 protein:vir:81067 protein:vir:97088	Xp10 Xop411 OP1	100 % 99 % 88 %
Tc1	protein:vir:10368 protein:vir:81066 protein:vir:97070	Xp10 Xop411 OP1	100 % 97 % 95 %