Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 35 lcl|Aclame:protein:vir:103886|NCBI_annot:putative HHsearch (proba=100.00%)
Portal 27 lcl|Aclame:protein:vir:103860|NCBI_annot:portal HHsearch (proba=100.00%)
TermL 26 lcl|Aclame:protein:vir:103868|NCBI_annot:hypothetical Blast (e-value=0)
MTP 41 lcl|Aclame:protein:vir:103876|NCBI_annot:hypothetical Blast (e-value=1e-148)
Sheath NOT FOUND
Ad1 38 lcl|Aclame:protein:vir:103846|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 29 lcl|Aclame:protein:vir:103841|NCBI_annot:virion HHsearch (proba=100.00%)
Tc1 39 lcl|Aclame:protein:vir:103883|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ne1<->Ad1 9 3
Ne1<->Tc1 10 2


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:103886
protein:vir:79246
protein:vir:99228
D3112
Phage MP22
DMS3
100 %
39 %
39 %
Portal protein:vir:103860
protein:vir:79233
protein:vir:99232
D3112
Phage MP22
DMS3
100 %
78 %
78 %
TermL protein:vir:103868
protein:vir:99234
protein:vir:79222
D3112
DMS3
Phage MP22
100 %
97 %
36 %
MTP protein:vir:103876
protein:vir:99223
protein:vir:79254
D3112
DMS3
Phage MP22
100 %
96 %
56 %
Ad1 protein:vir:103846
protein:vir:79253
protein:vir:99222
D3112
Phage MP22
DMS3
100 %
67 %
67 %
Ne1 protein:vir:103841
protein:vir:79225
protein:vir:99196
D3112
Phage MP22
DMS3
100 %
72 %
72 %
Tc1 protein:vir:103883
protein:vir:79247
protein:vir:99226
D3112
Phage MP22
DMS3
100 %
71 %
71 %