Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : D3112 | Genbank acc : NC_005178 | Aclame index mge :1522

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 8) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 55

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	35	lcl\|Aclame:protein:vir:103886\|NCBI_annot:putative	HHsearch (proba=100.00%)
Portal	27	lcl\|Aclame:protein:vir:103860\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	26	lcl\|Aclame:protein:vir:103868\|NCBI_annot:hypothetical	Blast (e-value=0)
MTP	41	lcl\|Aclame:protein:vir:103876\|NCBI_annot:hypothetical	Blast (e-value=1e-148)
Sheath	NOT FOUND
Ad1	38	lcl\|Aclame:protein:vir:103846\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	29	lcl\|Aclame:protein:vir:103841\|NCBI_annot:virion	HHsearch (proba=100.00%)
Tc1	39	lcl\|Aclame:protein:vir:103883\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Ad1	9	3
Ne1<->Tc1	10	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:103886 protein:vir:79246 protein:vir:99228	D3112 Phage MP22 DMS3	100 % 39 % 39 %
Portal	protein:vir:103860 protein:vir:79233 protein:vir:99232	D3112 Phage MP22 DMS3	100 % 78 % 78 %
TermL	protein:vir:103868 protein:vir:99234 protein:vir:79222	D3112 DMS3 Phage MP22	100 % 97 % 36 %
MTP	protein:vir:103876 protein:vir:99223 protein:vir:79254	D3112 DMS3 Phage MP22	100 % 96 % 56 %
Ad1	protein:vir:103846 protein:vir:79253 protein:vir:99222	D3112 Phage MP22 DMS3	100 % 67 % 67 %
Ne1	protein:vir:103841 protein:vir:79225 protein:vir:99196	D3112 Phage MP22 DMS3	100 % 72 % 72 %
Tc1	protein:vir:103883 protein:vir:79247 protein:vir:99226	D3112 Phage MP22 DMS3	100 % 71 % 71 %