Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 9 lcl|Aclame:protein:vir:108211|NCBI_annot:gp9|genbank:acc:YP_001552338;genbank:gi:160700658;genbank:G HHsearch (proba=100.00%)
Portal 6 lcl|Aclame:protein:vir:108215|NCBI_annot:gp6|genbank:acc:YP_001552335;genbank:gi:160700655;genbank:G HHsearch (proba=100.00%)
TermL 5 lcl|Aclame:protein:vir:108214|NCBI_annot:gp5|genbank:acc:YP_001552334;genbank:gi:160700654;genbank:G Blast (e-value=0)
MTP 15 lcl|Aclame:protein:vir:108237|NCBI_annot:gp15|genbank:acc:YP_001552344;genbank:gi:160700664;genbank: Blast (e-value=1e-105)
Sheath NOT FOUND
Ad1 11 lcl|Aclame:protein:vir:108221|NCBI_annot:gp11|genbank:acc:YP_001552340;genbank:gi:160700660;genbank: HHsearch (proba=100.00%)
Hc1 12 lcl|Aclame:protein:vir:108230|NCBI_annot:gp12|genbank:acc:YP_001552341;genbank:gi:160700661;genbank: HHsearch (proba=100.00%)
Ne1 13 lcl|Aclame:protein:vir:108236|NCBI_annot:gp13|genbank:acc:YP_001552342;genbank:gi:160700662;genbank: HHsearch (proba=100.00%)
Tc1 14 lcl|Aclame:protein:vir:108220|NCBI_annot:gp14|genbank:acc:YP_001552343;genbank:gi:160700663;genbank: HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:108211
protein:vir:78148
protein:vir:9820
Giles
Min1
315.4
100 %
21 %
16 %
Portal protein:vir:108215
protein:vir:78161
protein:vir:95254
Giles
Min1
Felix 01
100 %
39 %
18 %
TermL protein:vir:108214
protein:vir:8098
protein:vir:99071
Giles
Che9c
Wildcat
100 %
22 %
21 %
MTP protein:vir:108237
protein:vir:98437
protein:vir:9580
Giles
VWB
SM1
100 %
29 %
19 %
Ad1 protein:vir:108221
protein:vir:78478
protein:vir:78254
Giles
U2
Bethlehem
100 %
22 %
22 %
Hc1 protein:vir:108230
protein:vir:8431
protein:vir:8328
Giles
Omega
Corndog
100 %
21 %
22 %
Ne1 protein:vir:108236
protein:vir:9763
protein:vir:94763
Giles
315.3
phi LC3
100 %
18 %
22 %
Tc1 protein:vir:108220
protein:vir:98426
protein:vir:78124
Giles
VWB
Min1
100 %
24 %
26 %