Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Giles | Genbank acc : NC_009993 | Aclame index mge :2004

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 79

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	9	lcl\|Aclame:protein:vir:108211\|NCBI_annot:gp9\|genbank:acc:YP_001552338;genbank:gi:160700658;genbank:G	HHsearch (proba=100.00%)
Portal	6	lcl\|Aclame:protein:vir:108215\|NCBI_annot:gp6\|genbank:acc:YP_001552335;genbank:gi:160700655;genbank:G	HHsearch (proba=100.00%)
TermL	5	lcl\|Aclame:protein:vir:108214\|NCBI_annot:gp5\|genbank:acc:YP_001552334;genbank:gi:160700654;genbank:G	Blast (e-value=0)
MTP	15	lcl\|Aclame:protein:vir:108237\|NCBI_annot:gp15\|genbank:acc:YP_001552344;genbank:gi:160700664;genbank:	Blast (e-value=1e-105)
Sheath	NOT FOUND
Ad1	11	lcl\|Aclame:protein:vir:108221\|NCBI_annot:gp11\|genbank:acc:YP_001552340;genbank:gi:160700660;genbank:	HHsearch (proba=100.00%)
Hc1	12	lcl\|Aclame:protein:vir:108230\|NCBI_annot:gp12\|genbank:acc:YP_001552341;genbank:gi:160700661;genbank:	HHsearch (proba=100.00%)
Ne1	13	lcl\|Aclame:protein:vir:108236\|NCBI_annot:gp13\|genbank:acc:YP_001552342;genbank:gi:160700662;genbank:	HHsearch (proba=100.00%)
Tc1	14	lcl\|Aclame:protein:vir:108220\|NCBI_annot:gp14\|genbank:acc:YP_001552343;genbank:gi:160700663;genbank:	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:108211 protein:vir:78148 protein:vir:9820	Giles Min1 315.4	100 % 21 % 16 %
Portal	protein:vir:108215 protein:vir:78161 protein:vir:95254	Giles Min1 Felix 01	100 % 39 % 18 %
TermL	protein:vir:108214 protein:vir:8098 protein:vir:99071	Giles Che9c Wildcat	100 % 22 % 21 %
MTP	protein:vir:108237 protein:vir:98437 protein:vir:9580	Giles VWB SM1	100 % 29 % 19 %
Ad1	protein:vir:108221 protein:vir:78478 protein:vir:78254	Giles U2 Bethlehem	100 % 22 % 22 %
Hc1	protein:vir:108230 protein:vir:8431 protein:vir:8328	Giles Omega Corndog	100 % 21 % 22 %
Ne1	protein:vir:108236 protein:vir:9763 protein:vir:94763	Giles 315.3 phi LC3	100 % 18 % 22 %
Tc1	protein:vir:108220 protein:vir:98426 protein:vir:78124	Giles VWB Min1	100 % 24 % 26 %