Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 104 lcl|NC_016567.1_cdsid_YP_004957597.1 HHsearch (proba=100.00%)
Portal 58 lcl|NC_016567.1_cdsid_YP_004957551.1 HHsearch (proba=99.96%)
TermL 70 lcl|NC_016567.1_cdsid_YP_004957563.1 Blast (e-value=5e-09)
MTP 99 lcl|NC_016567.1_cdsid_YP_004957592.1 Blast (e-value=3e-24)
Sheath NOT FOUND
Ad1 102 lcl|NC_016567.1_cdsid_YP_004957595.1 HHsearch (proba=97.94%)
Hc1 NOT FOUND
Ne1 101 lcl|NC_016567.1_cdsid_YP_004957594.1 HHsearch (proba=99.95%)
Tc1 100 lcl|NC_016567.1_cdsid_YP_004957593.1 HHsearch (proba=90.31%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:99424
protein:vir:104256
protein:vir:100247
BJ1
T5
Bcep176
21 %
16 %
14 %
Portal protein:vir:94666mu1/616 %
TermL protein:vir:93883
protein:vir:2682
protein:vir:78630
3A
phiSLT
tp310-2
16 %
16 %
16 %
MTP protein:vir:99223
protein:vir:103876
protein:vir:79254
DMS3
D3112
Phage MP22
31 %
31 %
27 %
Ad1 protein:vir:80320
protein:vir:1435
protein:vir:93592
phi644-2
phiE125
phi 4795
15 %
14 %
17 %
Ne1 protein:vir:99833
protein:vir:98557
protein:vir:1838
B3
PSP3
186
20 %
19 %
18 %
Tc1 protein:vir:99226
protein:vir:79247
protein:vir:103883
DMS3
Phage MP22
D3112
22 %
19 %
17 %