Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : SIO-2 | Genbank acc : NC_016567

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 115

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	104	lcl\|NC_016567.1_cdsid_YP_004957597.1	HHsearch (proba=100.00%)
Portal	58	lcl\|NC_016567.1_cdsid_YP_004957551.1	HHsearch (proba=99.96%)
TermL	70	lcl\|NC_016567.1_cdsid_YP_004957563.1	Blast (e-value=5e-09)
MTP	99	lcl\|NC_016567.1_cdsid_YP_004957592.1	Blast (e-value=3e-24)
Sheath	NOT FOUND
Ad1	102	lcl\|NC_016567.1_cdsid_YP_004957595.1	HHsearch (proba=97.94%)
Hc1	NOT FOUND
Ne1	101	lcl\|NC_016567.1_cdsid_YP_004957594.1	HHsearch (proba=99.95%)
Tc1	100	lcl\|NC_016567.1_cdsid_YP_004957593.1	HHsearch (proba=90.31%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:99424 protein:vir:104256 protein:vir:100247	BJ1 T5 Bcep176	21 % 16 % 14 %
Portal	protein:vir:94666	mu1/6	16 %
TermL	protein:vir:93883 protein:vir:2682 protein:vir:78630	3A phiSLT tp310-2	16 % 16 % 16 %
MTP	protein:vir:99223 protein:vir:103876 protein:vir:79254	DMS3 D3112 Phage MP22	31 % 31 % 27 %
Ad1	protein:vir:80320 protein:vir:1435 protein:vir:93592	phi644-2 phiE125 phi 4795	15 % 14 % 17 %
Ne1	protein:vir:99833 protein:vir:98557 protein:vir:1838	B3 PSP3 186	20 % 19 % 18 %
Tc1	protein:vir:99226 protein:vir:79247 protein:vir:103883	DMS3 Phage MP22 D3112	22 % 19 % 17 %