Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 3 lcl|Aclame:protein:vir:1829|NCBI_annot:major HHsearch (proba=100.00%)
Portal 16 lcl|Aclame:protein:vir:1849|NCBI_annot:G HHsearch (proba=93.83%)
TermL 1 lcl|Aclame:protein:vir:1826|NCBI_annot:W Blast (e-value=1e-149)
MTP 14 lcl|Aclame:protein:vir:1846|NCBI_annot:tail Blast (e-value=1e-100)
Sheath 13 lcl|Aclame:protein:vir:1845|NCBI_annot:tail HHsearch (proba=100.00%)
Ad1 5 lcl|Aclame:protein:vir:1831|NCBI_annot:Q HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 8 lcl|Aclame:protein:vir:1838|NCBI_annot:O HHsearch (proba=100.00%)
Tc1 7 lcl|Aclame:protein:vir:1837|NCBI_annot:N HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:1829
protein:vir:98566
protein:vir:2016
186
PSP3
P2
100 %
93 %
75 %
TermL protein:vir:1826
protein:vir:98555
protein:vir:2014
186
PSP3
P2
100 %
36 %
36 %
MTP protein:vir:1846
protein:vir:98546
protein:vir:2036
186
PSP3
P2
100 %
99 %
74 %
Sheath protein:vir:1845
protein:vir:98553
protein:vir:6079
186
PSP3
WPhi
100 %
93 %
87 %
Ad1 protein:vir:1831
protein:vir:98558
protein:vir:2018
186
PSP3
P2
100 %
96 %
67 %
Ne1 protein:vir:1838
protein:vir:98557
protein:vir:2026
186
PSP3
P2
100 %
91 %
53 %
Tc1 protein:vir:1837
protein:vir:98561
protein:vir:5702
186
PSP3
L-413C
100 %
94 %
70 %