Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 186 | Genbank acc : NC_001317 | Aclame index mge :324

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 9) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 33

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	3	lcl\|Aclame:protein:vir:1829\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	16	lcl\|Aclame:protein:vir:1849\|NCBI_annot:G	HHsearch (proba=93.83%)
TermL	1	lcl\|Aclame:protein:vir:1826\|NCBI_annot:W	Blast (e-value=1e-149)
MTP	14	lcl\|Aclame:protein:vir:1846\|NCBI_annot:tail	Blast (e-value=1e-100)
Sheath	13	lcl\|Aclame:protein:vir:1845\|NCBI_annot:tail	HHsearch (proba=100.00%)
Ad1	5	lcl\|Aclame:protein:vir:1831\|NCBI_annot:Q	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	8	lcl\|Aclame:protein:vir:1838\|NCBI_annot:O	HHsearch (proba=100.00%)
Tc1	7	lcl\|Aclame:protein:vir:1837\|NCBI_annot:N	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:1829 protein:vir:98566 protein:vir:2016	186 PSP3 P2	100 % 93 % 75 %
TermL	protein:vir:1826 protein:vir:98555 protein:vir:2014	186 PSP3 P2	100 % 36 % 36 %
MTP	protein:vir:1846 protein:vir:98546 protein:vir:2036	186 PSP3 P2	100 % 99 % 74 %
Sheath	protein:vir:1845 protein:vir:98553 protein:vir:6079	186 PSP3 WPhi	100 % 93 % 87 %
Ad1	protein:vir:1831 protein:vir:98558 protein:vir:2018	186 PSP3 P2	100 % 96 % 67 %
Ne1	protein:vir:1838 protein:vir:98557 protein:vir:2026	186 PSP3 P2	100 % 91 % 53 %
Tc1	protein:vir:1837 protein:vir:98561 protein:vir:5702	186 PSP3 L-413C	100 % 94 % 70 %