Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : T5 | Genbank acc : NC_005859 | Aclame index mge :1504

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 4) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 161

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	148	lcl\|Aclame:protein:vir:104256\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	151	lcl\|Aclame:protein:vir:104259\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	154	lcl\|Aclame:protein:vir:104262\|NCBI_annot:terminase,	Blast (e-value=0)
MTP	150	lcl\|Aclame:protein:vir:104258\|NCBI_annot:putative	Blast (e-value=2e-15)
Sheath	NOT FOUND
Ad1	147	lcl\|Aclame:protein:vir:104255\|NCBI_annot:Hypothetical	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	145	lcl\|Aclame:protein:vir:104224\|NCBI_annot:Hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104256 protein:vir:485 protein:vir:101650	T5 P27 244	100 % 19 % 18 %
Portal	protein:vir:104259 protein:vir:1380 protein:vir:95965	T5 phi3626 2638A	100 % 20 % 20 %
TermL	protein:vir:104262 protein:vir:9870 protein:vir:102238	T5 315.5 PBI1	100 % 23 % 22 %
MTP	protein:vir:196 protein:vir:93600 protein:vir:105771	HK97 phi 4795 ES18	31 % 27 % 24 %
Ad1	protein:vir:104255 protein:vir:4512 protein:vir:1271	T5 V phi-105	100 % 22 % 22 %
Tc1	protein:vir:104224 protein:vir:3428 protein:vir:79571	T5 lambda cdtI	100 % 23 % 21 %