Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : BJ1 | Genbank acc : NC_008695 | Aclame index mge :1595

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 70

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	53	lcl\|Aclame:protein:vir:99424\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Portal	50	lcl\|Aclame:protein:vir:99452\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
TermL	49	lcl\|Aclame:protein:vir:99411\|NCBI_annot:hypothetical	Blast (e-value=0)
MTP	60	lcl\|Aclame:protein:vir:99405\|NCBI_annot:hypothetical	Blast (e-value=1e-174)
Sheath	NOT FOUND
Ad1	56	lcl\|Aclame:protein:vir:99447\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	58	lcl\|Aclame:protein:vir:99454\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	59	lcl\|Aclame:protein:vir:99421\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:99424 protein:vir:98566 protein:vir:1829	BJ1 PSP3 186	96 % 15 % 15 %
Portal	protein:vir:99452 protein:vir:6240 protein:vir:267	BJ1 phi-BT1 K139	100 % 17 % 17 %
TermL	protein:vir:99411 protein:vir:94525 protein:vir:96495	BJ1 phiJL-1 2972	100 % 19 % 19 %
MTP	protein:vir:99405 protein:vir:97240 protein:vir:6245	BJ1 M6 phi-BT1	100 % 15 % 14 %
Ad1	protein:vir:99447 protein:vir:80320 protein:vir:1435	BJ1 phi644-2 phiE125	100 % 17 % 17 %
Ne1	protein:vir:99454 protein:vir:97982 protein:vir:107545	BJ1 Orion PG1	100 % 20 % 20 %
Tc1	protein:vir:99421	BJ1	100 %