Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 8 lcl|Aclame:protein:vir:393|NCBI_annot:gp8|genbank:acc:NP_046903;genbank:gi:9630472;genbank:GeneID:12 HHsearch (proba=100.00%)
Portal 4 lcl|Aclame:protein:vir:389|NCBI_annot:gp4|genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:12 HHsearch (proba=100.00%)
TermL 2 lcl|Aclame:protein:vir:387|NCBI_annot:gp2|genbank:acc:NP_046897;genbank:gi:9630466;genbank:GeneID:12 Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 3 lcl|Aclame:protein:vir:388|NCBI_annot:gp3|genbank:acc:NP_046898;genbank:gi:9630467;genbank:GeneID:12 HHsearch (proba=99.95%)
Hc1 10 lcl|Aclame:protein:vir:395|NCBI_annot:gp10|genbank:acc:NP_046905;genbank:gi:9630475;genbank:GeneID:1 HHsearch (proba=100.00%)
Ne1 11 lcl|Aclame:protein:vir:396|NCBI_annot:gp11|genbank:acc:NP_046906;genbank:gi:9630476;genbank:GeneID:1 HHsearch (proba=100.00%)
Tc1 12 lcl|Aclame:protein:vir:397|NCBI_annot:gp12|genbank:acc:NP_046907;genbank:gi:9630477;genbank:GeneID:1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ad1<->Hc1 7 2
Tc1<->Ad1 9 4
Ne1<->Ad1 8 3


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:393
protein:vir:3424
protein:vir:6378
N15
lambda
BcepNazgul
100 %
90 %
26 %
Portal protein:vir:389
protein:vir:3420
protein:vir:6382
N15
lambda
BcepNazgul
100 %
88 %
33 %
TermL protein:vir:387
protein:vir:3418
protein:vir:10320
N15
lambda
VHML
100 %
87 %
30 %
Ad1 protein:vir:388
protein:vir:3419
protein:vir:6383
N15
lambda
BcepNazgul
100 %
85 %
37 %
Hc1 protein:vir:395
protein:vir:3426
protein:vir:97237
N15
lambda
M6
100 %
68 %
19 %
Ne1 protein:vir:396
protein:vir:3427
protein:vir:79555
N15
lambda
cdtI
100 %
60 %
56 %
Tc1 protein:vir:397
protein:vir:3428
protein:vir:79571
N15
lambda
cdtI
100 %
69 %
48 %