BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:96700|NCBI_annot:putative phage terminase large subunit|genbank:acc:YP_001039815;genbank:gi:126010850;genbank:GeneID:5 076210 (689 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|8305|lcl|protein:vir:96700 Length: 689 # NCBI annotation: put... 1435 0.0 gi|12290|lcl|protein:vir:79539 Length: 699 # NCBI annotation: pu... 109 9e-26 gi|19539|lcl|protein:vir:10320 Length: 627 # NCBI annotation: OR... 102 2e-23 gi|19767|lcl|protein:vir:6384 Length: 677 # NCBI annotation: ter... 89 2e-19 gi|5978|lcl|protein:vir:95489 Length: 659 # NCBI annotation: Put... 58 4e-10 gi|15908|lcl|protein:vir:3418 Length: 641 # NCBI annotation: DNA... 50 1e-07 gi|17272|lcl|protein:vir:387 Length: 640 # NCBI annotation: gp2 ... 41 5e-05 gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: t... 35 0.003 gi|17621|lcl|protein:vir:816 Length: 568 # NCBI annotation: hypo... 28 0.43 gi|25680|lcl|protein:vir:10116 Length: 568 # NCBI annotation: hy... 28 0.43 gi|51|lcl|protein:vir:3295 Length: 568 # NCBI annotation: putati... 28 0.43 gi|26240|lcl|protein:vir:2763 Length: 568 # NCBI annotation: hyp... 28 0.43 gi|25849|lcl|protein:vir:9949 Length: 568 # NCBI annotation: hyp... 28 0.43 gi|1476|lcl|protein:vir:104436 Length: 568 # NCBI annotation: pu... 28 0.43 gi|13633|lcl|protein:vir:3963 Length: 462 # NCBI annotation: put... 26 1.2 gi|21182|lcl|protein:vir:94185 Length: 1088 # NCBI annotation: p... 26 1.2 gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: g... 25 2.3 gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: g... 25 3.6 gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: ph... 25 3.6 gi|20804|lcl|protein:vir:106290 Length: 633 # NCBI annotation: g... 25 3.6 gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: t... 25 3.7 gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp... 25 3.8 gi|15418|lcl|protein:vir:1331 Length: 328 # NCBI annotation: gp3... 24 5.7 gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL ... 24 7.0 gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp... 23 8.2 >gi|8305|lcl|protein:vir:96700 Length: 689 # NCBI annotation: putative phage terminase large subunit # Family: family:all:140 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039815;genbank:gi:126010850;genbank:Ge neID:5076210 Length = 689 Score = 1435 bits (3715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 689/689 (100%), Positives = 689/689 (100%) Query: 1 MTQQRFDKSCSLSADGYAPQLPKDSCLKYRHSLQRLTASLRLMAEMVKAPPPRTADEWAR 60 MTQQRFDKSCSLSADGYAPQLPKDSCLKYRHSLQRLTASLRLMAEMVKAPPPRTADEWAR Sbjct: 1 MTQQRFDKSCSLSADGYAPQLPKDSCLKYRHSLQRLTASLRLMAEMVKAPPPRTADEWAR 60 Query: 61 ENRIMPPTSPIPGPFNPDTNPYMIPIVSAFANPQYNRVTFVMGTQMGKSVSMENLVGWRL 120 ENRIMPPTSPIPGPFNPDTNPYMIPIVSAFANPQYNRVTFVMGTQMGKSVSMENLVGWRL Sbjct: 61 ENRIMPPTSPIPGPFNPDTNPYMIPIVSAFANPQYNRVTFVMGTQMGKSVSMENLVGWRL 120 Query: 121 DDDPTPIMYVAPTSNLIDTTVEPKFMDMFQQAESLARKYDWNRSTKYTKWVGGTKFRFAW 180 DDDPTPIMYVAPTSNLIDTTVEPKFMDMFQQAESLARKYDWNRSTKYTKWVGGTKFRFAW Sbjct: 121 DDDPTPIMYVAPTSNLIDTTVEPKFMDMFQQAESLARKYDWNRSTKYTKWVGGTKFRFAW 180 Query: 181 AGSPTELAADSAGLVLVDEVDRIVNTGEGDTTEIIEARGDAYVDSKIGYTATPTHGKVER 240 AGSPTELAADSAGLVLVDEVDRIVNTGEGDTTEIIEARGDAYVDSKIGYTATPTHGKVER Sbjct: 181 AGSPTELAADSAGLVLVDEVDRIVNTGEGDTTEIIEARGDAYVDSKIGYTATPTHGKVER 240 Query: 241 TEHPRTGLTHWARSHRDALSSAIWRLWQSGTRHEWAVPCPHCGQYFIPHSELLWWPGKGT 300 TEHPRTGLTHWARSHRDALSSAIWRLWQSGTRHEWAVPCPHCGQYFIPHSELLWWPGKGT Sbjct: 241 TEHPRTGLTHWARSHRDALSSAIWRLWQSGTRHEWAVPCPHCGQYFIPHSELLWWPGKGT 300 Query: 301 EEECTPDQAEKKAMLTCPRNGCMIEDKYRAAMNKRGVPVAPGQTVTPDGVIEGEADTAGS 360 EEECTPDQAEKKAMLTCPRNGCMIEDKYRAAMNKRGVPVAPGQTVTPDGVIEGEADTAGS Sbjct: 301 EEECTPDQAEKKAMLTCPRNGCMIEDKYRAAMNKRGVPVAPGQTVTPDGVIEGEADTAGS 360 Query: 361 SHFSMWVSGLCSFAAKKSYGFLAKKLAAALQSGDPETLQGVYNTGFGECYALTGEVPAWE 420 SHFSMWVSGLCSFAAKKSYGFLAKKLAAALQSGDPETLQGVYNTGFGECYALTGEVPAWE Sbjct: 361 SHFSMWVSGLCSFAAKKSYGFLAKKLAAALQSGDPETLQGVYNTGFGECYALTGEVPAWE 420 Query: 421 EVKAMRWSYSAGEVLPGAEKLICTVDVQKNRLVYVVRAWFPGMGSQLVEFGELWGDTEKP 480 EVKAMRWSYSAGEVLPGAEKLICTVDVQKNRLVYVVRAWFPGMGSQLVEFGELWGDTEKP Sbjct: 421 EVKAMRWSYSAGEVLPGAEKLICTVDVQKNRLVYVVRAWFPGMGSQLVEFGELWGDTEKP 480 Query: 481 DVWDELGELLDREWYGMAIDAMGVDCGYRDNQVYQFVREHRTRARALRGFERLPKPYRKT 540 DVWDELGELLDREWYGMAIDAMGVDCGYRDNQVYQFVREHRTRARALRGFERLPKPYRKT Sbjct: 481 DVWDELGELLDREWYGMAIDAMGVDCGYRDNQVYQFVREHRTRARALRGFERLPKPYRKT 540 Query: 541 AIDVDSRGKTRKRGDARWDFDTGLAKAWVHSRIGWPETRPGFWLLPIDVSEDYCRQIVGE 600 AIDVDSRGKTRKRGDARWDFDTGLAKAWVHSRIGWPETRPGFWLLPIDVSEDYCRQIVGE Sbjct: 541 AIDVDSRGKTRKRGDARWDFDTGLAKAWVHSRIGWPETRPGFWLLPIDVSEDYCRQIVGE 600 Query: 601 EFNHRTGKWDKVGENHFLDCEAMNYMLACMLRLNRRKGDAMTLKDIKKQGEPAADEQQEE 660 EFNHRTGKWDKVGENHFLDCEAMNYMLACMLRLNRRKGDAMTLKDIKKQGEPAADEQQEE Sbjct: 601 EFNHRTGKWDKVGENHFLDCEAMNYMLACMLRLNRRKGDAMTLKDIKKQGEPAADEQQEE 660 Query: 661 AAEQSQPDAPKEQAPAGGRRFKVKRKPRR 689 AAEQSQPDAPKEQAPAGGRRFKVKRKPRR Sbjct: 661 AAEQSQPDAPKEQAPAGGRRFKVKRKPRR 689 >gi|12290|lcl|protein:vir:79539 Length: 699 # NCBI annotation: putative large terminase subunit # Family: family:all:140 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272515;genbank:gi:148609384;genbank:Ge neID:5204375 Length = 699 Score = 109 bits (273), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 145/615 (23%), Positives = 247/615 (40%), Gaps = 81/615 (13%) Query: 74 PFNPDTNPYMIPIVSAFANPQYNRVTFVMGTQMGKSVSM-ENLVGWRLDDDPTPIMYVAP 132 P++P+ PY+I ++ A+ +Y+ V FV + GK++ + + + + + DP+ ++ V Sbjct: 44 PWDPELTPYIIEPMNCLASREYDAVIFVGPARTGKTIGLIDGWIVYTIVCDPSDMLVVQM 103 Query: 133 TSNLIDTTVEPKFMDMFQQAESLARKYDWNRSTKYTK---WVGGTKFRFAWAGSPTELAA 189 T + + + F+ + ++ ++ R+ + G+ + W ++ Sbjct: 104 TEDKAREHSKKRLDRTFRSSAAVKKRMSPRRNDNNVHDKTFRDGSFLKIGWPSVNIMSSS 163 Query: 190 DSAGLVLVDEVDRIVNTGEGDTTEIIEARGDAYVDSKIGYTATPTHGKVERTEHPRTGL- 248 D + L D DR E I++ GD + + T + G P + Sbjct: 164 DYRFVALTD-YDRF--------PENIDSEGDGFSLASKRTTTFMSAGMTLVESSPGRDIC 214 Query: 249 -THWARS--HRDALSSAIWRLWQSGTRHEWAVPCPHCGQYFIPHSELLWWPGKGTEEECT 305 + W R H ++ I L+ G R W PCPHCG+YF P + + G E Sbjct: 215 DSKWRRKSPHEAPPTTGILSLYNRGDRRRWYWPCPHCGEYFQPAMDAM----TGYRNEPD 270 Query: 306 PDQAEKKAMLTCPRNGCMIEDKYRAAMNKRGVPVAPGQTVTPDGVIEGEADTAGSSHFSM 365 P +A + A L CP +I + + +N GV + GQ + +G + GE + + F Sbjct: 271 PFKASEAAYLLCPHCSGIITAEKKRELNSAGVWLREGQVIDRNGNVSGEPRRSRIASF-- 328 Query: 366 WVSGLCSFAAKKSYGFLAKKLAAALQ----SGDPETLQGVYNTGFGECYALTGEVPAWE- 420 W+ G AA +++ L KL A Q +G ETL+ V NT +G Y + + Sbjct: 329 WMEGPA--AAYQTWAQLVYKLLTAEQEYEATGSEETLRAVINTDWGLPYLPRASMEQRKS 386 Query: 421 EVKAMRWSYSAGEVLP-GAEKLICTVDVQKNR-LVYVVRAWFPGMGSQLVEFGELW---- 474 E+ R +P G L+ VDVQ R +VV+ G GS+ GE W Sbjct: 387 ELLEQRAEPVPSRSVPDGVNFLVAAVDVQAGRHRRFVVQV--TGYGSR----GERWIIDR 440 Query: 475 --------GDTEK----------PDVWDE-LGELLDREW-------YGMAIDAMGVDCGY 508 GD++ P+ WD L ++ + W M + AM VD G Sbjct: 441 YNITQSLRGDSDGESQRIDPASYPEDWDVLLTDVFHKSWPLASDPSQQMRLMAMAVDSGG 500 Query: 509 RD---NQVYQFVREHRTRARALRGFERLPKPYRKTAIDV----DSRGKTRKRGDAR---- 557 D + Y+F R R R + R+ + D+ G+T +R A Sbjct: 501 EDGVTDNAYKFWRRCRRDGLGKRIYLFKGDSIRRAKLITRTFPDNTGRTGRRAQAAGDVP 560 Query: 558 -WDFDTGLAKAWVHSRIGWPETRPGFWLLPIDVSEDYCRQIVGEEFNHRTGKWDKVGENH 616 W T K V++ + PG+ P + + ++ EE GKW K G Sbjct: 561 LWLLQTDALKDRVNNALWRDSPGPGYVHFPDWLGSWFYDELTYEE-RSSDGKWSKPGRGA 619 Query: 617 FLDCEAMNYMLACML 631 + M Y A ++ Sbjct: 620 NEAFDLMVYAEALVI 634 >gi|19539|lcl|protein:vir:10320 Length: 627 # NCBI annotation: ORF22 # Family: family:all:140 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758915;genbank:gi:27311189;genbank:GeneID :956138 Length = 627 Score = 102 bits (253), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 127/523 (24%), Positives = 197/523 (37%), Gaps = 66/523 (12%) Query: 32 SLQRLTASLRLMAEMVKAPPPRTADEWARENRIMPPTSPIPGPFNPDTNPYMIPIVSAFA 91 +L+R+ S+R PP T +W +N ++P G T P+ I I A Sbjct: 7 ALERIWTSVR---STWTPPPNLTISQWGDKNYVLPEEH---GGGKWKTKPFQIGIADAMC 60 Query: 92 NPQYNRVTFVMGTQMGKSVSMENLVGWRLDDDPTPIMYVAPTSNLIDTTVEPKFMDMFQQ 151 +P+ RVT + ++G + ++ +G+ +D DP ++ V PT + + + + M + Sbjct: 61 DPEEERVTVMKSMRVGYTKIVDLAIGYYMDADPCSMLVVQPTIDDAEGFSKDEIAPMLRD 120 Query: 152 AESLARKYDWNRSTKYTKWVGGTKFRFAWAGSPTELAADSAGLVLVDEVDRI-VNTG-EG 209 L K + T K G A SPT + +V+ DE+ NTG +G Sbjct: 121 VPCLQGKVQRDDDTLLKKVYPGGSLTLVGANSPTGFRRLTVRIVIFDEMSAYPANTGKDG 180 Query: 210 DTTEIIEARGDAYVDSKIGYTATPTHGKVERTEHPRTGLTHWARSHRDALSSAIWRLWQS 269 D E R + + KI +TPT V R E +S Sbjct: 181 DPVRQGEGRTFSAFNRKIIAGSTPTIAGVCRIEK---------------------EFIRS 219 Query: 270 GTRHEWAVPCPHCGQYFIPHSELLWWPGKGTE------EECTPDQAE--KKAML------ 315 R+ + VPCPHCG I WP E C D E KK M+ Sbjct: 220 DQRY-FHVPCPHCGHKHILQWSNFRWPEGQPELAHFVCPSCKKDIEEGSKKEMVAAGEFR 278 Query: 316 TCPRNGCMIEDKYRAAMNKRGVPVAPGQTVTPDGVIEGEADTAGSSHFSMWVSGLCSFAA 375 + C ++ A +K+G P+ GE +G + F +W + S Sbjct: 279 SIKPFTCCGHEQEPEAWDKKGRPICKHC---------GEVKISGHAGFHIWAA--YSDLP 327 Query: 376 KKSYGFLAKKLAAALQSGDPETLQGVYNTGFGECYALTGEVPAWEEVKAMRWSYS---AG 432 + LAK DP+ NT GE Y T W+ + R Y G Sbjct: 328 NAKWSKLAKYWEEV--KDDPDEKVVYVNTIRGETYKETETEVDWKPLYDRREPYGDDHDG 385 Query: 433 EVLPGAEKLICTVDVQKNRLVYVVRAWFPGMGSQLVEFGELWGDTEKPDVWDELGELLDR 492 +V ++ TVD Q NRL G L+ G + P+ +L LDR Sbjct: 386 KVPEAVRIILATVDTQDNRLEMTTIGIGEGEEVWLLNRKVFMGQPDNPETLAQLTRALDR 445 Query: 493 EW-----YGMAIDAMGVDC-GYRDNQVYQFVREHRTRARALRG 529 + + M I A +D G+ + + + +H R A+RG Sbjct: 446 TYTHACGFSMGITACAIDVQGHYYDTMLAYCAQHSDRCVAIRG 488 >gi|19767|lcl|protein:vir:6384 Length: 677 # NCBI annotation: terminase large subunit TerL # Family: family:all:140 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918997;genbank:gi:34610172;genbank:gi:912 14212;genbank:GeneID:2559603 Length = 677 Score = 88.6 bits (218), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 108/430 (25%), Positives = 167/430 (38%), Gaps = 22/430 (5%) Query: 43 MAEMVKAPPPRTADEWARENRIMPPTSPIPGPFNPDTNPYMIPIVSAFANPQYNRVTFVM 102 +A++ + P T + A + R + G + +T PYM+ ++ + ++ FV Sbjct: 5 LADIFRPPERLTVSQAAAKYRKLNTPGAYVGDWFNETVPYMVEPMNTLTSRDFDAEVFVG 64 Query: 103 GTQMGKSVSME-NLVGWRLDDDPTPIMYVAPTSNLIDTTVEPKFMDMFQQAESLARKYDW 161 Q GK+ + N VG+ + DP ++ PT++ + M + + + Sbjct: 65 PAQCGKTDGLLLNFVGYTVKVDPMDMILYCPTNSAARDFSVRRIDRMHRHSPEIGAMMAR 124 Query: 162 NRST--KYTK-WVGGTKFRFAWAGSPTELAADSAGLVLVDEVDRIVNTGEGDTTEIIEAR 218 +R T K+ K + GT +W S TE A G V + + DR+ + +GD A Sbjct: 125 SRDTDNKFDKHYKDGTILTLSWP-SVTEFAGRPIGRVCLTDYDRMPDDVDGDGEPFDLAS 183 Query: 219 GDAYVDSKIGYTATPTHGKVERTEHPRTGLTHWARSHRDALSSAIWRLWQSGTRHEWAVP 278 T + E E R L + H I L+ G R Sbjct: 184 KRTTTFGSFAMTLAESSPSREIEEDGRKWLA--SSPHEAPPCKGILGLYNRGDRRRRYWK 241 Query: 279 CPHCGQYFIPHSELLWWPGKGTEEECTPDQAEKKAMLTCPRNGCMIEDKYRAAMNKRGVP 338 CPHCG +F P +LL W G C + P G IE R ++ GV Sbjct: 242 CPHCGDWFEPTFKLLKWDDCGDAVSCA-----DTVRMEAPCCGGRIEADQRNDLDLWGVW 296 Query: 339 VAPGQTVTPDGVIEGEADTAGSSHFSMWVSGLCSFAAKKSYGFLAKKLAAALQ----SGD 394 + G+++T D G + + F W++G+ AA S+ L A + +G Sbjct: 297 LKDGESMTADDKRVGTPRRSRIASF--WMNGVV--AAFISWRKLVANYITAEEDYERTGS 352 Query: 395 PETLQGVYNTGFGECYALTGE--VPAWEEVKAMRWSYSAGEVLPGAEKLICTVDVQKNRL 452 E+L+ YNT GE Y G V E +KA V LI DVQKN Sbjct: 353 QESLKKFYNTDLGEPYFHRGNETVLLPETLKARAEVLREKHVPKAVRFLIGICDVQKNMW 412 Query: 453 VYVVRAWFPG 462 V V PG Sbjct: 413 VCNVFGIAPG 422 >gi|5978|lcl|protein:vir:95489 Length: 659 # NCBI annotation: Putative large subunit (GpA homolog) of DNA packaging dimer # Family: family:all:140 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293346;genbank:gi:148912767;genbank:Ge neID:5228141 Length = 659 Score = 58.2 bits (139), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 154/675 (22%), Positives = 249/675 (36%), Gaps = 95/675 (14%) Query: 33 LQRLTASLRLMAEMVKAPPPRTADEWARE----NRIMPPTSPIPGPFNPDTNPYMIPIVS 88 + L ++ L + + PP TA EWA + + +S G + T P+ + I++ Sbjct: 8 MNDLRKAVDLGLQGLYKSPPMTAVEWAEDPDDGFYMSAESSYNEGKWK--TAPFQVAILN 65 Query: 89 AFANPQYNRVTFVMGTQMGKSVSMENLVGWRLDDDPTPIMYVAPTSNLIDTTVEPKFMDM 148 A N V FV ++G + + +G+++ ++ +PT + + + Sbjct: 66 AMGNDLIRVVNFVKSARIGYTKMLMANIGYKIQHKRRNVLMWSPTDPDAEGISKSHVNGL 125 Query: 149 FQQAESLARKYDW-----NRSTKYTKWVGGTKFRFAWAG-SPTELAADSAGLVLVDEVDR 202 + L W + +T TK + + G + SA V+ DE+ + Sbjct: 126 IRDVPVLLALAPWYGRKHSDNTLDTKVFANRRTLWTLGGKAARNYRERSADEVIYDELSK 185 Query: 203 IVN--TGEGDTTEIIEARGDAYVDSKIGYTATP-THGKVERTEHPRTGLTHWARSHRDAL 259 GEG T + + R V K +TP T G+ + T+ Sbjct: 186 FDADIEGEGSPTFLGDQRLRGAVYPKSIRGSTPGTEGQCQITKAAD-------------- 231 Query: 260 SSAIWRLWQSGTRHEWAVPCPHCGQYFIPHSELLWWPGKGTE---EECTPDQAEKKAM-L 315 +S R + +PCPHCG H + L W GK + D E ++ Sbjct: 232 --------ESPRRLRYYIPCPHCG-----HEQTLKWGGKDCAFGVKYIANDLGEASSVWY 278 Query: 316 TCPRNGC--MIEDKYRAAMNKRGVPVAPGQTVTPDGVIE--GEADTAGSSHFSMWVSGLC 371 C C E ++RG V +E G D + S+ Sbjct: 279 ACENERCSGTFEHHEMVVASERGRWKCEVSGVWTRDAMEWFGPDDQPIRTPRSVAFYCWA 338 Query: 372 SFAAKKSYGFLAKKLAAALQSGDPETLQGVYNTGFGECYAL-TGEVPAWEEVKAMRWSYS 430 ++ S+ L + GD E L+ NT GE + GE W+ + A R +Y Sbjct: 339 VYSTWTSWLDLIDEWLKV--KGDREKLKTFTNTILGEVWVEDEGERVEWQTLYARRENYP 396 Query: 431 AGEVLPGAEKLICTVDVQKNRLVYVVRAWFPGMGSQ--LVEFGELWGDTEKPDVWDELGE 488 +V P A L+ +D Q +R Y R W G+G + LV L GD ++ ++G Sbjct: 397 --KVPPQALVLMGGIDTQDDR--YEGRVWAFGLGEEAWLVHRFILTGDPASEELRRKVGL 452 Query: 489 LLDREW-----YGMAIDAMGVDCG--YRDNQVYQFVREHRTRARALRGFERLPKPYRKTA 541 + R++ M ++ D G Y D + ++ G KP Sbjct: 453 EIHRQFTRADGVPMRVERWCWDAGGHYSDEVEAESIKHGVHWVVPTFGASTYGKP----- 507 Query: 542 IDVDSRGKTRKRGDARWDFDTGLAKAWVHSR------IGWPETRPGFWLLPID---VSED 592 + + K RKR + + T AK ++SR I W T PG PID ED Sbjct: 508 --IANFPKRRKRKVYKTELGTDNAKELIYSRLRIDVPIPWQPT-PGCVHFPIDSDICDED 564 Query: 593 YCRQIVGEEFNH------RTGKWDKVG-ENHFLDCEAMNYMLACMLRLNRRKG---DAMT 642 +QI E+ R +WD G N LDC Y LA + +R G D + Sbjct: 565 ELKQITAEKKKSVMAKGVRVLRWDSGGRRNEALDC--FVYALAALRISQQRFGLDLDQLE 622 Query: 643 LKDIKKQGEPAADEQ 657 + EP A +Q Sbjct: 623 RVRVDPVPEPVAQQQ 637 >gi|15908|lcl|protein:vir:3418 Length: 641 # NCBI annotation: DNA packaging protein # Family: family:all:140 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040581;genbank:gi:9626245;genbank:GeneID: 2703524 Length = 641 Score = 50.1 bits (118), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 106/455 (23%), Positives = 168/455 (36%), Gaps = 56/455 (12%) Query: 33 LQRLTASLRLMAEMVKAPPPRTADEWARENRIMPPTSPI-PGPFNPDTNPYMIPIVSAFA 91 + RL +R + P P+TA EWA N +P S G + +T P+ I++A Sbjct: 8 VNRLRHFVRAGLRSLFRPEPQTAVEWADANYYLPKESAYQEGRW--ETLPFQRAIMNAMG 65 Query: 92 NPQYNRVTFVMGTQMGKSVSMENLVGWRLDDDPTPIMYVAPT----SNLIDTTVEPKFMD 147 + V V ++G S + + + ++ + PT N + T VEP D Sbjct: 66 SDYIREVNVVKSARVGYSKMLLGVYAYFIEHKQRNTLIWLPTDGDAENFMKTHVEPTIRD 125 Query: 148 ---MFQQAESLARKYDWNRST--KYTKWVGGTKFRFAWAGSPTELAADSAGLVLVDEVDR 202 + A +K+ N T ++T G A + E + D AG + D Sbjct: 126 IPSLLALAPWYGKKHRDNTLTMKRFTNGRGFWCLGGKAAKNYREKSVDVAGYDELAAFDD 185 Query: 203 IVNTGEGDTTEIIEARGDAYVDSKIGYTATPTHGKVERTEHPRTGLTHWARSHRDALSSA 262 + EG T + + R + V K +TP + E + H+ R H Sbjct: 186 DIEQ-EGSPTFLGDKRIEGSVWPKSIRGSTPKVRGTCQIERAASESPHFMRFH------- 237 Query: 263 IWRLWQSGTRHEWAVPCPHCGQYFIPHSELLWWPGKGTE--EECTPDQAEKKAMLTCPRN 320 V CPHCG+ + L + K T + TPD L C N Sbjct: 238 --------------VACPHCGE-----EQYLKFGDKETPFGLKWTPDDPSSVFYL-CEHN 277 Query: 321 GCMIEDKYRAAMNKRGVPVAPGQTVTPDGVI-----EGEADTAGSSHFSMWVSGLCSFAA 375 C+I + + R + G T DG++ E + S F +W +++ Sbjct: 278 ACVIRQQELDFTDARYICEKTG-IWTRDGILWFSSSGEEIEPPDSVTFHIWT----AYSP 332 Query: 376 KKSYGFLAKKLAAALQSGDPETLQGVYNTGFGECY-ALTGEVPAWEEVKAMRWSYSAGEV 434 ++ + K GD + NT GE + A GE P EV A R + + V Sbjct: 333 FTTWVQIVKDWMKT--KGDTGKRKTFVNTTLGETWEAKIGERPD-AEVMAERKEHYSAPV 389 Query: 435 LPGAEKLICTVDVQKNRLVYVVRAWFPGMGSQLVE 469 L +D Q +R V W PG S L++ Sbjct: 390 PDRVAYLTAGIDSQLDRYEMRVWGWGPGEESWLID 424 >gi|17272|lcl|protein:vir:387 Length: 640 # NCBI annotation: gp2 # Family: family:all:140 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046897;genbank:gi:9630466;genbank:GeneID: 1261641 Length = 640 Score = 40.8 bits (94), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 108/496 (21%), Positives = 181/496 (36%), Gaps = 64/496 (12%) Query: 50 PPPRTADEWARENRIMPPTSPI-PGPFNPDTNPYMIPIVSAFANPQYNRVTFVMGTQMGK 108 P P TA EWA + +P S G + +T P+ I++A + V + ++G Sbjct: 25 PEPMTAVEWADAHYYLPKESAYQEGRW--ETLPFQRAIMNAMGSDYIRIVNVIKSARVGY 82 Query: 109 SVSMENLVGWRLDDDPTPIMYVAPTS----NLIDTTVEPKFMD---MFQQAESLARKYDW 161 S + ++ + ++ + PT N + + VEP D + A +K+ Sbjct: 83 SKMLLGVIAYFIEHKQRNELLWLPTDGDADNFMKSHVEPTIRDVPSLLSLAPWYGKKHRD 142 Query: 162 NRSTKYTKWVGGTKFRFAWAGSPTELAADSAGLVLVDEV---DRIVNTGEGDTTEIIEAR 218 N + ++ G F + S +V DE+ D + EG T + + R Sbjct: 143 N-TLSMKRFTNGRGFWCLGGKAAKNYREKSVDVVGYDELAAFDADIEK-EGSPTFLGDKR 200 Query: 219 GDAYVDSKIGYTATPTHGKVERTEHPRTGLTHWARSHRDALSSAIWRLWQSGTRHEWAVP 278 + V K +TP + E H+ R H V Sbjct: 201 IEGSVWPKSIRGSTPKLRGTCQIERAAKESGHFMRFH---------------------VA 239 Query: 279 CPHCGQYFIPHSELLWWPGKGTE--EECTPDQAEKKAMLTCPRNGCMIEDKYRAAMNKRG 336 CPHCG+ + L + + T + P+QAE L C N C+I+ N R Sbjct: 240 CPHCGE-----EQYLKFGDRDTPFGFKWEPEQAETVYYL-CEHNACVIKQHELDFSNARY 293 Query: 337 VPVAPGQTVTPDGV-----IEGEADTAGSSHFSMWVSGLCSFAAKKSYGFLAKKLAAALQ 391 + G T DG+ E D S F +W +++ ++ + K Sbjct: 294 ICELTG-IWTRDGLRWFSSSNAEIDPPESVTFHIWT----AYSPFTTWVQIVKDWFKT-- 346 Query: 392 SGDPETLQGVYNTGFGECY-ALTGEVPAWEEVKAMRWSYSAGEVLPGAEKLICTVDVQKN 450 GD + NT GE + A G+ P +V A R + V L +D Q + Sbjct: 347 KGDTGKRKTFVNTTLGETWEAKIGDRPD-ADVLAERKEHFDAAVPERVAYLTAGIDSQLD 405 Query: 451 RLVYVVRAWFPGMGSQLVEFGELWGDTEKPDVWDELGELLDREW-----YGMAIDAMGVD 505 R V W PG S L++ + G + + E +++ + M+I + D Sbjct: 406 RYEMRVWGWGPGEESWLIDRQIIMGRHDDESTLARVDEAINKTYTRRNGVEMSISRICWD 465 Query: 506 CGYRD-NQVYQFVREH 520 G D VY ++H Sbjct: 466 IGGIDPTIVYNRSKKH 481 >gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: terminase, large subunit # Family: family:all:147 # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006983;genbank:gi:46401884;genbank:GeneID :2777679 Length = 438 Score = 35.0 bits (79), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 13/138 (9%) Query: 67 PTSPIPGPFNPDTNPYMIPIVSAFANPQYNRVTFVMGTQMGKSVSMENLVGWRLDDDPTP 126 P S I N I I++A +P++ VT + ++GKS L +L + Sbjct: 26 PVSGILAQEGITPNGPQIAIINALEDPRHRFVTACVSRRVGKSFIAYTLGFLKLLEPNVK 85 Query: 127 IMYVAPTSNLIDTTVEPKFMDMFQQAESLARKYDW-----NRSTKYTKWVGGTKFRFAWA 181 ++ VAP +L + + Q L +KY N K + G+ F+ A A Sbjct: 86 VLVVAPNYSLANIG--------WSQIRGLIKKYGLQTERENAKDKEIELANGSLFKLASA 137 Query: 182 GSPTELAADSAGLVLVDE 199 S ++ DE Sbjct: 138 AQADSAVGRSYDFIIFDE 155 >gi|17621|lcl|protein:vir:816 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:16 # MgeName: VT2-Sa # Cross-refs: genbank:acc:NP_050549;genbank:gi:9633446;genbank:GeneID: 1262208 Length = 568 Score = 27.7 bits (60), Expect = 0.43, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Query: 618 LDCEAMNYMLACMLRLNRRKGDAMTLKDIKKQGEPAADEQQEEAAEQSQPDAPKEQAPAG 677 L E M Y A +N +TL D +KQ + +Q E +Q P P+E Sbjct: 260 LSREKMTYFSAVEKAMN------ITLTDEQKQWYINKETEQREEMKQEFPSTPQEAFLTS 313 Query: 678 GRR 680 GRR Sbjct: 314 GRR 316 >gi|25680|lcl|protein:vir:10116 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:180 # MgeName: Stx2 converting bacteriophage II # Cross-refs: genbank:acc:NP_859246;genbank:gi:32171173;genbank:GeneID :2653342 Length = 568 Score = 27.7 bits (60), Expect = 0.43, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Query: 618 LDCEAMNYMLACMLRLNRRKGDAMTLKDIKKQGEPAADEQQEEAAEQSQPDAPKEQAPAG 677 L E M Y A +N +TL D +KQ + +Q E +Q P P+E Sbjct: 260 LSREKMTYFSAVEKAMN------ITLTDEQKQWYINKETEQREEMKQEFPSTPQEAFLTS 313 Query: 678 GRR 680 GRR Sbjct: 314 GRR 316 >gi|51|lcl|protein:vir:3295 Length: 568 # NCBI annotation: putative large subunit terminase # Family: family:all:147 # MgeID: mge:66 # MgeName: 933W # Cross-refs: genbank:acc:NP_049511;genbank:gi:9632517;genbank:GeneID: 1262002 Length = 568 Score = 27.7 bits (60), Expect = 0.43, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Query: 618 LDCEAMNYMLACMLRLNRRKGDAMTLKDIKKQGEPAADEQQEEAAEQSQPDAPKEQAPAG 677 L E M Y A +N +TL D +KQ + +Q E +Q P P+E Sbjct: 260 LSREKMTYFSAVEKAMN------ITLTDEQKQWYINKETEQREEMKQEFPSTPQEAFLTS 313 Query: 678 GRR 680 GRR Sbjct: 314 GRR 316 >gi|26240|lcl|protein:vir:2763 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:59 # MgeName: Stx2 converting bacteriophage I # Cross-refs: genbank:acc:NP_612880;genbank:gi:20065962;genbank:GeneID :935714 Length = 568 Score = 27.7 bits (60), Expect = 0.43, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Query: 618 LDCEAMNYMLACMLRLNRRKGDAMTLKDIKKQGEPAADEQQEEAAEQSQPDAPKEQAPAG 677 L E M Y A +N +TL D +KQ + +Q E +Q P P+E Sbjct: 260 LSREKMTYFSAVEKAMN------ITLTDEQKQWYINKETEQREEMKQEFPSTPQEAFLTS 313 Query: 678 GRR 680 GRR Sbjct: 314 GRR 316 >gi|25849|lcl|protein:vir:9949 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:179 # MgeName: Stx1 converting bacteriophage # Cross-refs: genbank:acc:NP_859079;genbank:gi:32171001;genbank:GeneID :2653280 Length = 568 Score = 27.7 bits (60), Expect = 0.43, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Query: 618 LDCEAMNYMLACMLRLNRRKGDAMTLKDIKKQGEPAADEQQEEAAEQSQPDAPKEQAPAG 677 L E M Y A +N +TL D +KQ + +Q E +Q P P+E Sbjct: 260 LSREKMTYFSAVEKAMN------ITLTDEQKQWYINKETEQREEMKQEFPSTPQEAFLTS 313 Query: 678 GRR 680 GRR Sbjct: 314 GRR 316 >gi|1476|lcl|protein:vir:104436 Length: 568 # NCBI annotation: putative terminase large subunit # Family: family:all:147 # MgeID: mge:1471 # MgeName: 86 # Cross-refs: genbank:acc:YP_794060;genbank:gi:116222005;genbank:GeneI D:4397501 Length = 568 Score = 27.7 bits (60), Expect = 0.43, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Query: 618 LDCEAMNYMLACMLRLNRRKGDAMTLKDIKKQGEPAADEQQEEAAEQSQPDAPKEQAPAG 677 L E M Y A +N +TL D +KQ + +Q E +Q P P+E Sbjct: 260 LSREKMTYFSAVEKAMN------ITLTDEQKQWYINKETEQREEMKQEFPSTPQEAFLTS 313 Query: 678 GRR 680 GRR Sbjct: 314 GRR 316 >gi|13633|lcl|protein:vir:3963 Length: 462 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663671;genbank:gi:21716108;genbank:GeneID :951204 Length = 462 Score = 26.2 bits (56), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 11/97 (11%) Query: 62 NRIMPPTSPIPGPFNPDTNPYMIPIVSAFA----NPQYNRVTFVMGTQMGKSVSMENLVG 117 N IMP F Y++ + F + +++ + + + GKS+++ V Sbjct: 22 NLIMPS-------FYKRDRAYLVTMCEEFQSFLNDDEHDVLVLNLPPRHGKSLTLGKFVE 74 Query: 118 WRLDDDPTPIMYVAPTSNLIDTTVEPKFMDMFQQAES 154 W L +D T + + ++ T + QQ ++ Sbjct: 75 WVLGNDHTKKIMTGSYNEILSTVFSKNVRNTIQQNKA 111 >gi|21182|lcl|protein:vir:94185 Length: 1088 # NCBI annotation: putative ATP-dependent DNA helicase # Family: family:all:1546 # MgeID: mge:1500 # MgeName: phiEL # Cross-refs: genbank:acc:YP_418044;genbank:gi:82700944;goa:Q2Z170;int erpro:IPR000871;uniprot:Q2Z170;genbank:GeneID:5176636 Length = 1088 Score = 26.2 bits (56), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 376 KKSYGFLAKKLAAALQSGDPETLQGVYNTGFGECYALTGEVPAWEEVKAMRWSYSAGE 433 K+ +GF+ K + G + + V NTG+G CYA + ++K R + A + Sbjct: 906 KQYFGFVTTKTTRDVLYGLIQ--EAVGNTGYGLCYAKLADELINLKLKGDRIDHDAKQ 961 >gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: gp17 terminase subunit # Family: family:all:147 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656379;genbank:gi:109290130;genbank:GeneI D:4156516 Length = 612 Score = 25.4 bits (54), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 14/73 (19%) Query: 179 AWAGSPTELAADSAGLVLVDEVDRIVNTGEGDTTEIIEARGDAYVDSKIGYTATPTHGKV 238 A++ SP + +S L+ +DEV I N D I+ + SKI T TP Sbjct: 226 AFSSSPDAVRGNSFALIYIDEVAFIPNF--NDAWLAIQPVISSGRHSKILMTTTP----- 278 Query: 239 ERTEHPRTGLTHW 251 GL HW Sbjct: 279 -------NGLNHW 284 >gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238880;genbank:gi:66391955;genbank:GeneID :3416630 Length = 613 Score = 24.6 bits (52), Expect = 3.6, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 14/73 (19%) Query: 179 AWAGSPTELAADSAGLVLVDEVDRIVNTGEGDTTEIIEARGDAYVDSKIGYTATPTHGKV 238 A++ SP + +S L+ VDEV I N D I+ + SKI T TP Sbjct: 227 AFSSSPDAVRGNSFALIYVDEVAFIPNF--TDAWMAIQPVISSGRRSKILMTTTP----- 279 Query: 239 ERTEHPRTGLTHW 251 GL HW Sbjct: 280 -------NGLNHW 285 >gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: phage terminase ATPase subunit # Family: family:all:169 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293751;genbank:gi:72537721;genbank:GeneID :3608097 Length = 601 Score = 24.6 bits (52), Expect = 3.6, Method: Compositional matrix adjust. Identities = 11/22 (50%), Positives = 13/22 (59%) Query: 176 FRFAWAGSPTELAADSAGLVLV 197 +R W G L DSAGLV+V Sbjct: 420 YREVWVGYDPALTGDSAGLVVV 441 >gi|20804|lcl|protein:vir:106290 Length: 633 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944105;genbank:gi:38640149;genbank:GeneID :2658038 Length = 633 Score = 24.6 bits (52), Expect = 3.6, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 14/73 (19%) Query: 179 AWAGSPTELAADSAGLVLVDEVDRIVNTGEGDTTEIIEARGDAYVDSKIGYTATPTHGKV 238 A+A SP + +S L+ VDE I G DT + I + S+I T+TP Sbjct: 260 AYASSPDAVRGNSFALIYVDECAFI--EGFEDTWKAILPVISSGRQSRIILTSTP----- 312 Query: 239 ERTEHPRTGLTHW 251 G+ HW Sbjct: 313 -------NGINHW 318 >gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932508;genbank:gi:37651634;genbank:GeneID :2610679 Length = 613 Score = 24.6 bits (52), Expect = 3.7, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 14/73 (19%) Query: 179 AWAGSPTELAADSAGLVLVDEVDRIVNTGEGDTTEIIEARGDAYVDSKIGYTATPTHGKV 238 A++ SP + +S L+ VDEV I N D I+ + SKI T TP Sbjct: 227 AFSSSPDAVRGNSFALIYVDEVAFIPNF--TDAWMAIQPVISSGRRSKILMTTTP----- 279 Query: 239 ERTEHPRTGLTHW 251 GL HW Sbjct: 280 -------NGLNHW 285 >gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111154;genbank:gi:134288710;genbank:Ge neID:4960655 Length = 601 Score = 24.6 bits (52), Expect = 3.8, Method: Compositional matrix adjust. Identities = 11/22 (50%), Positives = 13/22 (59%) Query: 176 FRFAWAGSPTELAADSAGLVLV 197 +R W G L DSAGLV+V Sbjct: 420 YREVWVGYDPALTGDSAGLVVV 441 >gi|15418|lcl|protein:vir:1331 Length: 328 # NCBI annotation: gp39 # Family: family:all:11659 # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047930;swissprot:trembl:q9zxa8;genbank:gi :9631148;uniprot:Q9ZXA8;genbank:GeneID:2715890 Length = 328 Score = 24.3 bits (51), Expect = 5.7, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Query: 346 TPDGVIEGEADTAGSSHFSMWVSG-LCSFAAKKSYGFL 382 T +G +EGE A + +VSG +CSF A +G L Sbjct: 233 TYEGTLEGEFSAASLGLYDAFVSGEVCSFKA-TFFGIL 269 >gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112694;genbank:gi:13786562;genbank:GeneID :921033 Length = 462 Score = 23.9 bits (50), Expect = 7.0, Method: Compositional matrix adjust. Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 11/97 (11%) Query: 62 NRIMPPTSPIPGPFNPDTNPYMIPIVSAFA----NPQYNRVTFVMGTQMGKSVSMENLVG 117 N IMP F Y++ + F + +++ + + + GKS+++ V Sbjct: 22 NLIMPS-------FYKRDRAYLVTMCEEFQSFLNDNEHDVLVLNLPPRHGKSLTLGKFVE 74 Query: 118 WRLDDDPTPIMYVAPTSNLIDTTVEPKFMDMFQQAES 154 W L +D T + + + T + Q+ ++ Sbjct: 75 WVLGNDHTKKIMTGSYNETLSTVFSKNVRNTLQEEKA 111 >gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111035;genbank:gi:134288784;genbank:Ge neID:4960696 Length = 589 Score = 23.5 bits (49), Expect = 8.2, Method: Compositional matrix adjust. Identities = 11/21 (52%), Positives = 12/21 (57%) Query: 177 RFAWAGSPTELAADSAGLVLV 197 R W G L DSAGLV+V Sbjct: 409 REVWVGYDPALTGDSAGLVVV 429 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.318 0.134 0.429 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 343,984 Number of Sequences: 514 Number of extensions: 16821 Number of successful extensions: 91 Number of sequences better than 100.0: 26 Number of HSP's better than 100.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 31 length of query: 689 length of database: 206,069 effective HSP length: 78 effective length of query: 611 effective length of database: 165,977 effective search space: 101411947 effective search space used: 101411947 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)