BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:96741|NCBI_annot:putative tail tube protein|genbank:acc:YP_001039840;genbank:gi:126010870;genbank:GeneID:5 076251 (168 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|8330|lcl|protein:vir:96741 Length: 168 # NCBI annotation: put... 341 4e-96 gi|2195|lcl|protein:vir:100324 Length: 168 # NCBI annotation: ta... 66 3e-13 gi|11899|lcl|protein:vir:79133 Length: 169 # NCBI annotation: pu... 47 2e-07 gi|4414|lcl|protein:vir:98546 Length: 172 # NCBI annotation: gp2... 45 5e-07 gi|13755|lcl|protein:vir:1846 Length: 173 # NCBI annotation: tai... 44 8e-07 gi|9915|lcl|protein:vir:103992 Length: 169 # NCBI annotation: ph... 39 3e-05 gi|11951|lcl|protein:vir:79203 Length: 169 # NCBI annotation: gp... 39 3e-05 gi|10962|lcl|protein:vir:78189 Length: 169 # NCBI annotation: gp... 39 3e-05 gi|18705|lcl|protein:vir:5712 Length: 172 # NCBI annotation: FII... 39 3e-05 gi|17000|lcl|protein:vir:6080 Length: 172 # NCBI annotation: gpF... 39 4e-05 gi|17354|lcl|protein:vir:2036 Length: 172 # NCBI annotation: gpF... 39 4e-05 gi|19556|lcl|protein:vir:10337 Length: 167 # NCBI annotation: OR... 38 5e-05 gi|15695|lcl|protein:vir:1173 Length: 171 # NCBI annotation: hyp... 29 0.036 gi|4548|lcl|protein:vir:94970 Length: 473 # NCBI annotation: put... 22 3.1 gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: mat... 21 9.4 >gi|8330|lcl|protein:vir:96741 Length: 168 # NCBI annotation: putative tail tube protein # Family: family:all:129 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039840;genbank:gi:126010870;genbank:Ge neID:5076251 Length = 168 Score = 341 bits (874), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 168/168 (100%), Positives = 168/168 (100%) Query: 1 MAGQRSRKLLAATVNGHPLLAEIDEFTPPEVKKVMEEARGGKFIADEIMVGLEKLTYELK 60 MAGQRSRKLLAATVNGHPLLAEIDEFTPPEVKKVMEEARGGKFIADEIMVGLEKLTYELK Sbjct: 1 MAGQRSRKLLAATVNGHPLLAEIDEFTPPEVKKVMEEARGGKFIADEIMVGLEKLTYELK 60 Query: 61 VLGPTADLLSAYGLKQGEICQVDVKASEQDKEGNKYALHYSLSGEVVGVKEEGVKMGSKP 120 VLGPTADLLSAYGLKQGEICQVDVKASEQDKEGNKYALHYSLSGEVVGVKEEGVKMGSKP Sbjct: 61 VLGPTADLLSAYGLKQGEICQVDVKASEQDKEGNKYALHYSLSGEVVGVKEEGVKMGSKP 120 Query: 121 GVTISGSLTAYKKTENGTTVYDINTATQVINLGQGDIMAEHRRNVGLP 168 GVTISGSLTAYKKTENGTTVYDINTATQVINLGQGDIMAEHRRNVGLP Sbjct: 121 GVTISGSLTAYKKTENGTTVYDINTATQVINLGQGDIMAEHRRNVGLP 168 >gi|2195|lcl|protein:vir:100324 Length: 168 # NCBI annotation: tail tube protein FII # Family: family:all:129 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655493;genbank:gi:109289961;genbank:GeneI D:4157367 Length = 168 Score = 65.9 bits (159), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 7/159 (4%) Query: 13 TVNGHPLLAEIDEFTPPEVKKVMEEARGGKFIAD-EIMVGLEKLTYELKVLGPTADLLSA 71 +V+G L E E T P++ +E+ R G IA + +GLEKL E K+ G DLL Sbjct: 13 SVDGTSYLGETTEVTQPKLAMQLEDYRAGGMIAPVGVNMGLEKLELEFKIGGHEEDLLKL 72 Query: 72 YGLKQGEICQVDVK---ASEQDKEGNKYALHYSLSGEVVGVKEEGVKMGSKPGVTISGSL 128 +G G I + A + D + + A+ G + + E K G + SL Sbjct: 73 FG---GSISGNAFRFNGAYQHDDDDSVDAVELVCRGRIAEIDEGSSKAGDDTEHSYKASL 129 Query: 129 TAYKKTENGTTVYDINTATQVINLGQGDIMAEHRRNVGL 167 T YKKT NG + +I+T Q+ + D +AE R+ +GL Sbjct: 130 TYYKKTVNGVDIIEIDTLNQIYIVDGKDRLAEIRKAMGL 168 >gi|11899|lcl|protein:vir:79133 Length: 169 # NCBI annotation: putative tail tube protein gpFII # Family: family:all:129 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165277;genbank:gi:145708102;genbank:Ge neID:5247144 Length = 169 Score = 46.6 bits (109), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 2/169 (1%) Query: 1 MAGQRSRKLLAATVNGHPLLAEIDEFTPPEVKKVMEEAR-GGKFIADEIMVGLEKLTYEL 59 MA R K +G E +E P++ + +EE R GG A +I +G EKL E Sbjct: 1 MALPRILKHFNVFADGVVHTGECEEINLPKLARKLEEYRAGGMNGAIQIDMGNEKLELET 60 Query: 60 KVLGPTADLLSAYGLKQGEICQVDVKASEQDKEGNKY-ALHYSLSGEVVGVKEEGVKMGS 118 GP ++L YG + + + Q ++ + A+ + G + K G+ Sbjct: 61 TYGGPMREILKQYGTTAVDGAMIRFAGAYQHEDTKEVDAVEIVVRGRHTEIDFGTAKAGA 120 Query: 119 KPGVTISGSLTAYKKTENGTTVYDINTATQVINLGQGDIMAEHRRNVGL 167 K + SLT YK T NG +++ V + D +A RR +GL Sbjct: 121 KAPFKVKSSLTYYKMTVNGEVWCELDFVNFVEVVFGEDRLAAQRRAIGL 169 >gi|4414|lcl|protein:vir:98546 Length: 172 # NCBI annotation: gp22 # Family: family:all:129 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958077;genbank:gi:41057374;genbank:GeneID :2744217 Length = 172 Score = 45.1 bits (105), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 5/172 (2%) Query: 1 MAGQRSRKLLAATVNGHPLLAEIDEFTPPEVKKVMEEARGGKFI-ADEIMVGLEK--LTY 57 MA R K L +G + ++ T P++ + +E RGG A I +GL+ LT Sbjct: 1 MALPRKLKYLNMFNDGLSYMGVVESVTLPKLTRKLENYRGGGMNGAAAIDLGLDDDALTV 60 Query: 58 ELKVLG-PTADLLSAYGLKQGEICQVDVKASEQ-DKEGNKYALHYSLSGEVVGVKEEGVK 115 E V G P L + Y + + S Q D G A+ + G + K Sbjct: 61 EWSVGGLPDVALWAQYAAPGADAVPLRFAGSYQRDDTGEIVAVEVVMRGRHKEIDGGENK 120 Query: 116 MGSKPGVTISGSLTAYKKTENGTTVYDINTATQVINLGQGDIMAEHRRNVGL 167 G +S T Y+ T +G+ V +I+T V + D + +HRR +GL Sbjct: 121 QGENTSTKLSTVCTYYRLTIDGSDVIEIDTVNMVEKVNGVDRLEQHRRAIGL 172 >gi|13755|lcl|protein:vir:1846 Length: 173 # NCBI annotation: tail tube protein FII # Family: family:all:129 # MgeID: mge:324 # MgeName: 186 # Cross-refs: genbank:acc:NP_052270;genbank:gi:9634077;genbank:GeneID: 1262451 Length = 173 Score = 44.3 bits (103), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 5/172 (2%) Query: 1 MAGQRSRKLLAATVNGHPLLAEIDEFTPPEVKKVMEEARGGKFI-ADEIMVGLEK--LTY 57 MA R K L +G + ++ T P++ + +E RGG A I +GL+ LT Sbjct: 1 MALPRKLKYLNMFNDGLSYMGVVESVTLPKLTRKLENYRGGGMNGAAAIDLGLDDDALTV 60 Query: 58 ELKVLG-PTADLLSAYGLKQGEICQVDVKASEQ-DKEGNKYALHYSLSGEVVGVKEEGVK 115 E V G P L + Y + + S Q D G A+ + G + K Sbjct: 61 EWSVGGLPDVALWAQYAAPGADAVPLRFAGSYQRDDTGEIVAVEVVMRGRHKEIDGGENK 120 Query: 116 MGSKPGVTISGSLTAYKKTENGTTVYDINTATQVINLGQGDIMAEHRRNVGL 167 G +S T Y+ T +G+ + +I+T V + D + +HRR +GL Sbjct: 121 QGENTSTKLSTVCTYYRLTIDGSDIIEIDTVNMVEKVNGVDRLEQHRRAIGL 172 >gi|9915|lcl|protein:vir:103992 Length: 169 # NCBI annotation: phage major tail tube protein # Family: family:all:129 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293728;genbank:gi:72537698;genbank:GeneID :3608122 Length = 169 Score = 38.9 bits (89), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 12/169 (7%) Query: 7 RKLLAATV--NGHPLLAEIDEFTPPEVKKVMEEARGGKFIAD-EIMVGLEKLTYELKVLG 63 RKL V NG + E++E P++K+ ME +G +I G E+L E G Sbjct: 5 RKLKGFNVFHNGANFVGEVEELNLPKLKRKMEAWQGSGMTGPVKIDYGSEELQLEWTCGG 64 Query: 64 PTADLLSAYGLKQGEICQVDVKASEQDKEGNKYALHYSLSGEVVGVKEEGVKMGSKPG-- 121 ++L YG Q + + + ++ K H + V G EE + MG+ Sbjct: 65 FMVEVLEQYGAVQHDGVLLRFAGGYRREDSKK---HDQIEVVVKGRHEE-IDMGTAKAKE 120 Query: 122 ---VTISGSLTAYKKTENGTTVYDINTATQVINLGQGDIMAEHRRNVGL 167 I+ + + YK T NG + +++ V + D+ ++ RR +GL Sbjct: 121 DTKFKITTNASYYKLTVNGRDLIELDFVNAVEKINGMDLASDLRRAMGL 169 >gi|11951|lcl|protein:vir:79203 Length: 169 # NCBI annotation: gp29, phage major tail tube protein # Family: family:all:129 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111060;genbank:gi:134288759;genbank:Ge neID:4960722 Length = 169 Score = 38.9 bits (89), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 12/169 (7%) Query: 7 RKLLAATV--NGHPLLAEIDEFTPPEVKKVMEEARGGKFIAD-EIMVGLEKLTYELKVLG 63 RKL V NG + E++E P++K+ ME +G +I G E+L E G Sbjct: 5 RKLKGFNVFHNGANFVGEVEELNLPKLKRKMEAWQGSGMTGPVKIDYGSEELQLEWTCGG 64 Query: 64 PTADLLSAYGLKQGEICQVDVKASEQDKEGNKYALHYSLSGEVVGVKEEGVKMGSKPG-- 121 ++L YG Q + + + ++ K H + V G EE + MG+ Sbjct: 65 FMVEVLEQYGAVQHDGVLLRFAGGYRREDSKK---HDQIEVVVKGRHEE-IDMGTAKAKE 120 Query: 122 ---VTISGSLTAYKKTENGTTVYDINTATQVINLGQGDIMAEHRRNVGL 167 I+ + + YK T NG + +++ V + D+ ++ RR +GL Sbjct: 121 DTKFKITTNASYYKLTVNGRDLIELDFVNAVEKINGMDLASDLRRAMGL 169 >gi|10962|lcl|protein:vir:78189 Length: 169 # NCBI annotation: gp32, phage major tail tube protein # Family: family:all:129 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111182;genbank:gi:134288724;genbank:Ge neID:4960649 Length = 169 Score = 38.9 bits (89), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 12/169 (7%) Query: 7 RKLLAATV--NGHPLLAEIDEFTPPEVKKVMEEARGGKFIAD-EIMVGLEKLTYELKVLG 63 RKL V NG + E++E P++K+ ME +G +I G E+L E G Sbjct: 5 RKLKGFNVFHNGANFVGEVEELNLPKLKRKMEAWQGSGMTGPVKIDYGSEELQLEWTCGG 64 Query: 64 PTADLLSAYGLKQGEICQVDVKASEQDKEGNKYALHYSLSGEVVGVKEEGVKMGSKPG-- 121 ++L YG Q + + + ++ K H + V G EE + MG+ Sbjct: 65 FMVEVLEQYGAVQHDGVLLRFAGGYRREDSKK---HDQIEVVVKGRHEE-IDMGTAKAKE 120 Query: 122 ---VTISGSLTAYKKTENGTTVYDINTATQVINLGQGDIMAEHRRNVGL 167 I+ + + YK T NG + +++ V + D+ ++ RR +GL Sbjct: 121 DTKFKITTNASYYKLTVNGRDLIELDFVNAVEKINGMDLASDLRRAMGL 169 >gi|18705|lcl|protein:vir:5712 Length: 172 # NCBI annotation: FII # Family: family:all:129 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839871;genbank:gi:30065726;genbank:GeneID :1260619 Length = 172 Score = 38.9 bits (89), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 5/172 (2%) Query: 1 MAGQRSRKLLAATVNGHPLLAEIDEFTPPEVKKVMEEARG-GKFIADEIMVGLEK--LTY 57 MA R KL+ +NG+ T P++ + +E RG G + + +GL+ L+ Sbjct: 1 MAMPRKLKLMNVFLNGYSYQGVAKSVTLPKLTRKLENYRGAGMNGSAPVDLGLDDDALSM 60 Query: 58 ELKVLG-PTADLLSAYGLKQGEICQVDVKASEQ-DKEGNKYALHYSLSGEVVGVKEEGVK 115 E + G P + + Y + + S Q D G A+ + G V K Sbjct: 61 EWSLGGFPDSVIWELYAATSADAVPIRFAGSYQRDDTGETVAVEVVMRGRQKEVDTGEGK 120 Query: 116 MGSKPGVTISGSLTAYKKTENGTTVYDINTATQVINLGQGDIMAEHRRNVGL 167 G + T +K T +G + +I+T + + D + +HRRN+GL Sbjct: 121 QGEDTESKLPVICTYFKLTMDGKELVEIDTINMIEKVNGVDRLEQHRRNIGL 172 >gi|17000|lcl|protein:vir:6080 Length: 172 # NCBI annotation: gpFII # Family: family:all:129 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878221;genbank:gi:33438920;genbank:GeneID :1457755 Length = 172 Score = 38.5 bits (88), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 5/172 (2%) Query: 1 MAGQRSRKLLAATVNGHPLLAEIDEFTPPEVKKVMEEARG-GKFIADEIMVGLEK--LTY 57 MA R KL+ +NG+ T P++ + +E RG G + + +GL+ L+ Sbjct: 1 MAMPRKLKLMNVFLNGYSYQGVAKSVTLPKLTRKLENYRGAGMNGSAPVDLGLDDDALSM 60 Query: 58 ELKVLG-PTADLLSAYGLKQGEICQVDVKASEQ-DKEGNKYALHYSLSGEVVGVKEEGVK 115 E + G P + + Y + + S Q D G A+ + G + K Sbjct: 61 EWSLGGFPDSVIWELYAATGVDAVPIRFAGSYQRDDTGETVAVEVVMRGRQKEIDTGEGK 120 Query: 116 MGSKPGVTISGSLTAYKKTENGTTVYDINTATQVINLGQGDIMAEHRRNVGL 167 G IS T ++ T +G + +I+T + + D + +HRRN+GL Sbjct: 121 QGEDTESKISVVCTYFRLTMDGKELVEIDTINMIEKVNGVDRLEQHRRNIGL 172 >gi|17354|lcl|protein:vir:2036 Length: 172 # NCBI annotation: gpFII # Family: family:all:129 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046779;genbank:gi:9630350;genbank:GeneID: 1261535 Length = 172 Score = 38.5 bits (88), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 5/172 (2%) Query: 1 MAGQRSRKLLAATVNGHPLLAEIDEFTPPEVKKVMEEARG-GKFIADEIMVGLEK--LTY 57 MA R KL+ +NG+ T P++ + +E RG G + + +GL+ L+ Sbjct: 1 MAMPRKLKLMNVFLNGYSYQGVAKSVTLPKLTRKLENYRGAGMNGSAPVDLGLDDDALSM 60 Query: 58 ELKVLG-PTADLLSAYGLKQGEICQVDVKASEQ-DKEGNKYALHYSLSGEVVGVKEEGVK 115 E + G P + + Y + + S Q D G A+ + G + K Sbjct: 61 EWSLGGFPDSVIWELYAATGVDAVPIRFAGSYQRDDTGETVAVEVVMRGRQKEIDTGEGK 120 Query: 116 MGSKPGVTISGSLTAYKKTENGTTVYDINTATQVINLGQGDIMAEHRRNVGL 167 G IS T ++ T +G + +I+T + + D + +HRRN+GL Sbjct: 121 QGEDTESKISVVCTYFRLTMDGKELVEIDTINMIEKVNGVDRLEQHRRNIGL 172 >gi|19556|lcl|protein:vir:10337 Length: 167 # NCBI annotation: ORF40 # Family: family:all:129 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758932;genbank:gi:27311208;genbank:GeneID :956127 Length = 167 Score = 38.1 bits (87), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 5/148 (3%) Query: 23 IDEFTPPEVKKVMEEARGGKFIAD-EIMVGLEKLTYELKVLGPTADLLSAYGLKQGEICQ 81 ++E TPP++ EE + G A E+ G+EKL V +L +AYGL G++ Sbjct: 22 VEEVTPPKLTLKTEEFKAGGMDAPLELDQGMEKLECNFTVASYEKELFAAYGLVPGKMIN 81 Query: 82 VDVK-ASEQDKEGNKYALHYSLSGEVVGVKEEGVKMGSKPGVTISGSLTAYK-KTENGTT 139 V ++ A EQD E + + L+G + K G K + ++ L + K G Sbjct: 82 VTLRGAFEQDGETREVVM--VLNGSWKELDFGTWKSGEKAQLKVAVGLQEVETKNPTGEE 139 Query: 140 VYDINTATQVINLGQGDIMAEHRRNVGL 167 I+ V + D++ R+ +GL Sbjct: 140 KVFIDIPNMVRRINGTDLLEAARKAIGL 167 >gi|15695|lcl|protein:vir:1173 Length: 171 # NCBI annotation: hypothetical protein # Family: family:all:129 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490622;genbank:gi:17313242;genbank:GeneID :927298 Length = 171 Score = 28.9 bits (63), Expect = 0.036, Method: Compositional matrix adjust. Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 14/176 (7%) Query: 1 MAGQRSRKLLAATVNGHPLLAEIDEFTPPEVKKVMEEARGGKF---IADEIMVGLEKLTY 57 MA R K + +G + T P + + ME RGG + ++ + + + Sbjct: 1 MAMPRKLKNMNLFNDGGSYQGVVKSCTLPPLARKMEAFRGGGMNGPVKADLGFDDDGIQF 60 Query: 58 ELKVLGPTADLLSAYGLKQGEICQVDVKAS-EQDKEGNKYALHYSLSGEVVGVKEEGVKM 116 E + G L YG + S +QD G ++ + G + E ++M Sbjct: 61 EWTLGGLDLTALKQYGAVSANGVMLRFAGSFQQDDTGEVTSVEIVVRG-----RHETIEM 115 Query: 117 G-SKPGVT----ISGSLTAYKKTENGTTVYDINTATQVINLGQGDIMAEHRRNVGL 167 G ++PG I+ + + YK NG V +I+ V + D++ R+ +GL Sbjct: 116 GDAQPGEDTEHKITTTCSYYKLVVNGEEVIEIDLLNFVEKVNGKDLLEAQRKAIGL 171 >gi|4548|lcl|protein:vir:94970 Length: 473 # NCBI annotation: putative phage terminase large subunit # Family: family:all:144 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239275;genbank:gi:66392134;genbank:GeneID :5076615 Length = 473 Score = 22.3 bits (46), Expect = 3.1, Method: Compositional matrix adjust. Identities = 9/29 (31%), Positives = 14/29 (48%) Query: 16 GHPLLAEIDEFTPPEVKKVMEEARGGKFI 44 G ++ E FTPP ++ + R G I Sbjct: 123 GFLIIDEATHFTPPMIRFIRSRVRLGSMI 151 >gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: maturation protein # Family: family:all:697 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338131;genbank:gi:77118209;genbank:GeneID :3707752 Length = 575 Score = 20.8 bits (42), Expect = 9.4, Method: Compositional matrix adjust. Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%) Query: 70 SAYGLKQGEICQVDVKASEQDKEGNKYALHYSLSGEVVGVKEEGVKMG 117 SA+ +I +D +D+ G YA+ Y L+G + ++ G++ G Sbjct: 338 SAFSSYTQKILVIDPSGRGKDETG--YAVLYQLNGYIFAMEVGGMRGG 383 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.311 0.132 0.363 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,334 Number of Sequences: 514 Number of extensions: 3102 Number of successful extensions: 22 Number of sequences better than 100.0: 16 Number of HSP's better than 100.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 16 length of query: 168 length of database: 206,069 effective HSP length: 65 effective length of query: 103 effective length of database: 172,659 effective search space: 17783877 effective search space used: 17783877 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 34 (17.7 bits)