Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 8 lcl|Aclame:protein:vir:3424|NCBI_annot:capsid HHsearch (proba=100.00%)
Portal 4 lcl|Aclame:protein:vir:3420|NCBI_annot:capsid HHsearch (proba=100.00%)
TermL 2 lcl|Aclame:protein:vir:3418|NCBI_annot:DNA Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 3 lcl|Aclame:protein:vir:3419|NCBI_annot:head-tail HHsearch (proba=99.96%)
Hc1 10 lcl|Aclame:protein:vir:3426|NCBI_annot:head-tail HHsearch (proba=100.00%)
Ne1 11 lcl|Aclame:protein:vir:3427|NCBI_annot:tail HHsearch (proba=100.00%)
Tc1 12 lcl|Aclame:protein:vir:3428|NCBI_annot:tail HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ad1<->Hc1 7 2
Tc1<->Ad1 9 4
Ne1<->Ad1 8 3


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:3424
protein:vir:393
protein:vir:6378
lambda
N15
BcepNazgul
100 %
90 %
25 %
Portal protein:vir:3420
protein:vir:389
protein:vir:6382
lambda
N15
BcepNazgul
100 %
88 %
34 %
TermL protein:vir:3418
protein:vir:387
protein:vir:10320
lambda
N15
VHML
100 %
87 %
29 %
Ad1 protein:vir:3419
protein:vir:388
protein:vir:6383
lambda
N15
BcepNazgul
100 %
85 %
38 %
Hc1 protein:vir:3426
protein:vir:395
protein:vir:80382
lambda
N15
BcepGomr
100 %
68 %
17 %
Ne1 protein:vir:3427
protein:vir:396
protein:vir:79555
lambda
N15
cdtI
100 %
61 %
54 %
Tc1 protein:vir:3428
protein:vir:397
protein:vir:79571
lambda
N15
cdtI
100 %
69 %
51 %