Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : lambda | Genbank acc : NC_001416 | Aclame index mge :70

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 6) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 71

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	8	lcl\|Aclame:protein:vir:3424\|NCBI_annot:capsid	HHsearch (proba=100.00%)
Portal	4	lcl\|Aclame:protein:vir:3420\|NCBI_annot:capsid	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:3418\|NCBI_annot:DNA	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	3	lcl\|Aclame:protein:vir:3419\|NCBI_annot:head-tail	HHsearch (proba=99.96%)
Hc1	10	lcl\|Aclame:protein:vir:3426\|NCBI_annot:head-tail	HHsearch (proba=100.00%)
Ne1	11	lcl\|Aclame:protein:vir:3427\|NCBI_annot:tail	HHsearch (proba=100.00%)
Tc1	12	lcl\|Aclame:protein:vir:3428\|NCBI_annot:tail	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad1<->Hc1	7	2
Tc1<->Ad1	9	4
Ne1<->Ad1	8	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:3424 protein:vir:393 protein:vir:6378	lambda N15 BcepNazgul	100 % 90 % 25 %
Portal	protein:vir:3420 protein:vir:389 protein:vir:6382	lambda N15 BcepNazgul	100 % 88 % 34 %
TermL	protein:vir:3418 protein:vir:387 protein:vir:10320	lambda N15 VHML	100 % 87 % 29 %
Ad1	protein:vir:3419 protein:vir:388 protein:vir:6383	lambda N15 BcepNazgul	100 % 85 % 38 %
Hc1	protein:vir:3426 protein:vir:395 protein:vir:80382	lambda N15 BcepGomr	100 % 68 % 17 %
Ne1	protein:vir:3427 protein:vir:396 protein:vir:79555	lambda N15 cdtI	100 % 61 % 54 %
Tc1	protein:vir:3428 protein:vir:397 protein:vir:79571	lambda N15 cdtI	100 % 69 % 51 %