Query lcl|Aclame:protein:vir:96750|NCBI_annot:putative phage-related protein|genbank:acc:YP_001039816;genbank:gi:126010851;genbank:GeneID:5076260 Match_columns 176 No_of_seqs 22 out of 26 Neff 4.1 Searched_HMMs 1612 Date Mon Dec 2 14:09:20 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_57 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_57_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:96750 Length: 176 100.0 7.2E-86 4.5E-89 487.4 21.2 176 1-176 1-176 (176) 2 protein:vir:79544 Length: 70 # 97.4 1.4E-06 8.5E-10 52.7 7.0 70 101-175 1-70 (70) 3 protein:vir:388 Length: 68 # N 47.2 0.53 0.00033 22.1 5.7 65 104-171 1-68 (68) 4 protein:vir:3419 Length: 68 # 46.5 0.54 0.00034 22.0 5.6 65 104-171 1-68 (68) 5 protein:vir:5202 Length: 448 # 9.3 7 0.0043 15.9 8.2 90 1-102 355-448 (448) 6 protein:vir:15 Length: 472 # N 5.5 12 0.0076 14.6 4.6 93 1-106 372-472 (472) 7 protein:vir:118 Length: 449 # 5.4 12 0.0077 14.6 6.8 88 1-106 356-449 (449) 8 protein:vir:395 Length: 117 # 2.9 24 0.015 13.0 4.3 84 1-105 23-117 (117) 9 protein:vir:741 Length: 110 # 2.3 29 0.018 12.5 5.5 81 88-176 1-110 (110) 10 protein:vir:96262 Length: 274 1.9 35 0.022 12.1 6.3 79 1-90 194-274 (274) No 1 >protein:vir:96750 Length: 176 # NCBI annotation: putative phage-related protein # Family: family:all:3872 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039816;genbank:gi:126010851;genbank:GeneID:5076260 Probab=100.00 E-value=7.2e-86 Score=487.36 Aligned_cols=176 Identities=100% Similarity=1.469 Sum_probs=175.2 Q ss_pred CCcCceeccCccEEEEecCCCCCCCccceeeeEeecCcEEEEEEEeeCCeEEEEechhhcccccccceEEEEEEECCCcE Q lcl|Aclame:pro 1 MSEPIKLQAGDSITWSREAPGYPAEDGWSLHYALRGPAPIDLSTTGDGTVYKVSVSAADSAKWSAGDYVFSCFVVKGEDR 80 (176) Q Consensus 1 mt~P~~i~AGdsv~w~~~l~~ypas~~wtL~y~lrg~~~idi~a~a~~~~~~v~~~as~Ta~w~~G~y~~~~~vt~g~d~ 80 (176) |+||.||+|||||+|.+++|+|||++||+|+|+||||++|||+++++|++|+|++++++|++|+||+|+|+|+|++|+|| T Consensus 1 ~~~P~kl~aG~S~s~~~~~~~YPa~~~w~l~~~lrG~~~idl~a~~dg~~~~~~~~a~~Ta~W~pG~Y~y~~r~~~g~d~ 80 (176) T protein:vir:96 1 MSEPIKLQAGDSITWSREAPGYPAEDGWSLHYALRGPAPIDLSTTGDGTVYKVSVSAADSAKWSAGDYVFSCFVVKGEDR 80 (176) T ss_pred CCccceeccccceEEeeccCCCCCCccceeeeeeeCCeeEEEEEeccCceeEEEecCccccccCcCceEEEEEEeCCcce Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEecccEEEEeechhhccCCCCchHHHHHHHHHHHHHhcccccceeeEEEcCeEEEEcCHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 81 QTLGTGRLTILPDLAATNPVDARSHAKRMLDAIEATLEKRATRDQQSYEIEGRRLDRIPIPELLKLRDRYRREHQRELEQ 160 (176) Q Consensus 81 ~~v~~G~i~IlPdla~~~~~D~RS~a~~~LdaIeA~ie~rat~d~~~Y~I~~R~L~r~~i~eLlklr~~y~~~varE~~~ 160 (176) +|+++|+|+|+|||+++++||+||||||+||||||+||||||+||++|+||||+|.|+||+||||||++|++||+||+.+ T Consensus 81 ~~~~~G~i~I~pDla~~~~~D~Rsha~~~LdAIeAvLe~RAt~dQ~~y~IngR~L~rtpI~eLlkLR~~yr~e~arE~~~ 160 (176) T protein:vir:96 81 QTLGTGRLTILPDLAATNPVDARSHAKRMLDAIEATLEKRATRDQQSYEIEGRRLDRIPIPELLKLRDRYRREHQRELEQ 160 (176) T ss_pred eeeccceEEEeechhhcCCCCCchHHHHHHHHHHHHHhccccccceeeEecCeeeeccCHHHHHHHHHHHHHHHHHHhHh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hccCCccCceEEEEeC Q lcl|Aclame:pro 161 AGLRPRRQSFIRVSLS 176 (176) Q Consensus 161 ~g~~~~~~~~V~vrf~ 176 (176) +|+++++|++|+|||| T Consensus 161 s~~~~~~g~~v~v~~~ 176 (176) T protein:vir:96 161 AGLRPRRQSFIRVSLS 176 (176) T ss_pred hcCCCCCCceeEEeeC Confidence 9999999999999999 No 2 >protein:vir:79544 Length: 70 # NCBI annotation: hypothetical protein # Family: family:all:1547 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272516;genbank:gi:148609385;genbank:GeneID:5204380 Probab=97.38 E-value=1.4e-06 Score=52.74 Aligned_cols=70 Identities=11% Similarity=0.183 Sum_probs=49.8 Q ss_pred CCchHHHHHHHHHHHHHhcccccceeeEEEcCeEEEEcCHHHHHHHHHHHHHHHHHHHhhhccCCccCceEEEEe Q lcl|Aclame:pro 101 DARSHAKRMLDAIEATLEKRATRDQQSYEIEGRRLDRIPIPELLKLRDRYRREHQRELEQAGLRPRRQSFIRVSL 175 (176) Q Consensus 101 D~RS~a~~~LdaIeA~ie~rat~d~~~Y~I~~R~L~r~~i~eLlklr~~y~~~varE~~~~g~~~~~~~~V~vrf 175 (176) =.+.+++++|++--++-.. --.-|||+||||+|.+-+|+|+-|-|.++..++++....+++++ +.=-.|| T Consensus 1 mt~e~~~~ml~~yleAE~a--vl~GkS~ti~gr~lTre~LseIRkgr~~We~rl~~~~~~r~g~~---~~kvarF 70 (70) T protein:vir:79 1 MNQNDIEAMIQRYTEAEMA--VLDGKSVTFNGQQMTMENLSEIRQGRQEWERRLAALITRRRGHP---GYRLARF 70 (70) T ss_pred CCHHHHHHHHHHHHHHHHH--HHcCCceeeCCeeecccCHHHHHHHHHHHHHHHHHHhcccCCCC---CcccccC Confidence 5678888888754433221 12238999999999999999999999999999998775432222 2223566 No 3 >protein:vir:388 Length: 68 # NCBI annotation: gp3 # Family: family:all:1709 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046898;genbank:gi:9630467;genbank:GeneID:1261642 Probab=47.21 E-value=0.53 Score=22.10 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=43.0 Q ss_pred hHHHHHHHHHHHHHhcccc-cceeeEEEcCeEEEEc--CHHHHHHHHHHHHHHHHHHHhhhccCCccCceE Q lcl|Aclame:pro 104 SHAKRMLDAIEATLEKRAT-RDQQSYEIEGRRLDRI--PIPELLKLRDRYRREHQRELEQAGLRPRRQSFI 171 (176) Q Consensus 104 S~a~~~LdaIeA~ie~rat-~d~~~Y~I~~R~L~r~--~i~eLlklr~~y~~~varE~~~~g~~~~~~~~V 171 (176) =--+.+|+..|+++-..-+ +.+.+-+-|||..++. ||.||.+-...++..+-= .++.++|.|-.| T Consensus 1 M~~~~~L~eAr~AlH~LltG~~Vvsv~~dGr~V~ys~Asi~~L~~YI~~Le~~LG~---~~rrR~PaGv~v 68 (68) T protein:vir:38 1 MATQTELDAARAALHDLMMGKRVATVQKDGRRVEFTATSVSDLKKYIADLESQVGT---TSRRRGPAGFYV 68 (68) T ss_pred CcHHHHHHHHHHHHHHhhhCceeEEEeeCCcEEEeeecCHHHHHHHHHHHHHHhcc---CCCccCcccccC Confidence 3345678888888866666 5689999999988774 566666655555554432 234556777555 No 4 >protein:vir:3419 Length: 68 # NCBI annotation: head-tail joining protein # Family: family:all:1709 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040582;genbank:gi:9626246;genbank:GeneID:2703525 Probab=46.54 E-value=0.54 Score=22.03 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=44.9 Q ss_pred hHHHHHHHHHHHHHhcccc-cceeeEEEcCeEEEEc--CHHHHHHHHHHHHHHHHHHHhhhccCCccCceE Q lcl|Aclame:pro 104 SHAKRMLDAIEATLEKRAT-RDQQSYEIEGRRLDRI--PIPELLKLRDRYRREHQRELEQAGLRPRRQSFI 171 (176) Q Consensus 104 S~a~~~LdaIeA~ie~rat-~d~~~Y~I~~R~L~r~--~i~eLlklr~~y~~~varE~~~~g~~~~~~~~V 171 (176) =--+.+|+..|+++-..-+ +.+.+-+-|||..++. ||.||.+-...++..+.- .++.++|.|=.| T Consensus 1 M~~~~~L~eAr~AlH~LltGk~Vv~v~~dGr~V~ys~Asi~~L~~YI~~Le~~LG~---~~r~R~Pagv~v 68 (68) T protein:vir:34 1 MTRQEELAAARAALHDLMTGKRVATVQKDGRRVEFTATSVSDLKKYIAELEVQTGM---TQRRRGPAGFYV 68 (68) T ss_pred CcHHHHHHHHHHHHHHhhhcceeEEEeeCCcEEEeeecCHHHHHHHHHHHHHHhcc---CCCccCcccccC Confidence 3345678888888866666 5689999999988764 677777766666665543 335556677445 No 5 >protein:vir:5202 Length: 448 # NCBI annotation: major head protein # Family: family:all:4054 # MgeID: mge:116 # MgeName: PZA # Cross-refs: genbank:acc:NP_040725;genbank:gi:9626396;genbank:GeneID:1260967 Probab=9.33 E-value=7 Score=15.95 Aligned_cols=90 Identities=13% Similarity=0.229 Sum_probs=42.2 Q ss_pred CCcCceeccCccEEEEecCCCCCCCccceeeeEeecCcE-EEEEEEeeCCeEEEEechhhcccccccceEEEEEE---EC Q lcl|Aclame:pro 1 MSEPIKLQAGDSITWSREAPGYPAEDGWSLHYALRGPAP-IDLSTTGDGTVYKVSVSAADSAKWSAGDYVFSCFV---VK 76 (176) Q Consensus 1 mt~P~~i~AGdsv~w~~~l~~ypas~~wtL~y~lrg~~~-idi~a~a~~~~~~v~~~as~Ta~w~~G~y~~~~~v---t~ 76 (176) =--++++..|.|.++.-.....-+++ -+..|...|++. .+|.+. + .+++.+..|+.-. -.+-+ +. T Consensus 355 sPttasL~~G~TqqlTATVsg~na~~-~~VTWSvS~ns~~aTVsss----G-~vTv~a~gTatIT-----VtATvdts~a 423 (448) T protein:vir:52 355 SPNIAAVKQGGKQQFTAYVRATDGKD-HKVVWSVEGGSTGTAITGD----G-LLSVSGNEENQLT-----VKATVDIGTE 423 (448) T ss_pred cccceeecCCCeEEEEEEEecCCCCC-CceEEEEcCCceeeEEeCC----c-cEEeccCCcceEE-----EEEEecCccc Confidence 22346788899988877765444432 345555555542 233322 1 3444443332111 11111 22 Q ss_pred CCcEEEecccEEEEeechhhccCCCC Q lcl|Aclame:pro 77 GEDRQTLGTGRLTILPDLAATNPVDA 102 (176) Q Consensus 77 g~d~~~v~~G~i~IlPdla~~~~~D~ 102 (176) +..+.++..-.++|.|+-+..|. +. T Consensus 424 ~~~~~vv~ea~VsvtP~~as~G~-q~ 448 (448) T protein:vir:52 424 DKPNLVVGEAVVSIRPNNASGGA-QA 448 (448) T ss_pred CCceeeeeeEEEEecCCCCCCcC-CC Confidence 33354554445666676664443 22 No 6 >protein:vir:15 Length: 472 # NCBI annotation: major head protein # Family: family:all:4054 # MgeID: mge:323 # MgeName: GA-1 # Cross-refs: genbank:acc:NP_073691;swissprot:sw:q9fzw7;genbank:gi:12248115;uniprot:Q9FZW7;genbank:GeneID:919909 Probab=5.49 E-value=12 Score=14.61 Aligned_cols=93 Identities=18% Similarity=0.205 Sum_probs=41.3 Q ss_pred CCc-Cceec-cCc--cEEEEecCCCCCCCccceeeeEeecCcEEEEEEEeeCCeEEEEechhhcccccccceEEEEEEEC Q lcl|Aclame:pro 1 MSE-PIKLQ-AGD--SITWSREAPGYPAEDGWSLHYALRGPAPIDLSTTGDGTVYKVSVSAADSAKWSAGDYVFSCFVVK 76 (176) Q Consensus 1 mt~-P~~i~-AGd--sv~w~~~l~~ypas~~wtL~y~lrg~~~idi~a~a~~~~~~v~~~as~Ta~w~~G~y~~~~~vt~ 76 (176) |+- --+|. +=+ -|+|.++ ..-|+..+|+...++-+.. +.+-+++..+..+-+=+.| --+-+++ T Consensus 372 ~~~~~~ti~~~v~~~~v~ws~~-~~~~a~~~yat~~~~~N~~---------~~g~~~~~~~~~~ig~d~~---v~v~~~~ 438 (472) T protein:vir:15 372 MEAIIRTITPNVQIEDVEWSLE-NVGLSSAEYATVSITANEN---------KTGAKLVSAQPLPVGGDVR---VKVTVTD 438 (472) T ss_pred Eeeeeeccccchhhhhheeehh-hcCCccccceeeEEeecCC---------CccceeeecceeccCCccc---eeeeccC Confidence 220 00001 111 2677766 5555555566555543221 2222333333222221111 1112222 Q ss_pred CCc-EEEecccEEEEeechhhc---cCCCCchHH Q lcl|Aclame:pro 77 GED-RQTLGTGRLTILPDLAAT---NPVDARSHA 106 (176) Q Consensus 77 g~d-~~~v~~G~i~IlPdla~~---~~~D~RS~a 106 (176) +.. .=-.+.-.|.|.||+.++ .+.||-|-- T Consensus 439 ~~~nk~v~~e~~i~v~~~~~~~~~~~~~~~~~~~ 472 (472) T protein:vir:15 439 PKNNKDIEGEAHISIIPDFNATPIQTPVDPPSGE 472 (472) T ss_pred ccCCCCccceEEEEEeeCCCCCcccccCCCCCCC Confidence 211 223455678999999875 468887754 No 7 >protein:vir:118 Length: 449 # NCBI annotation: major head protein # Family: family:all:4054 # MgeID: mge:4 # MgeName: B103 # Cross-refs: genbank:acc:NP_690641;swissprot:sw:q37888;genbank:gi:22855155;interpro:IPR003343;uniprot:Q37888;genbank:GeneID:955370 Probab=5.41 E-value=12 Score=14.57 Aligned_cols=88 Identities=11% Similarity=0.219 Sum_probs=37.6 Q ss_pred CCcCceeccCccEEEEecCCCCCCCccceeeeEeecCcE-EEEEEEeeCCeEEEEechhhcccccccceEEEEEEECCC- Q lcl|Aclame:pro 1 MSEPIKLQAGDSITWSREAPGYPAEDGWSLHYALRGPAP-IDLSTTGDGTVYKVSVSAADSAKWSAGDYVFSCFVVKGE- 78 (176) Q Consensus 1 mt~P~~i~AGdsv~w~~~l~~ypas~~wtL~y~lrg~~~-idi~a~a~~~~~~v~~~as~Ta~w~~G~y~~~~~vt~g~- 78 (176) .--...|..|+|.+..-......+++ =++.|.-.++.. ..+. +++ .|++.+.-|+.-. +.++.++ T Consensus 356 tPss~tL~~G~T~qLTATV~psnatn-k~VTWSsSd~s~~ATVd----a~G-~VTAva~GTAtIT-------Ata~~~s~ 422 (449) T protein:vir:11 356 SPAIASVKQGKSQAFTAYVRATDDKE-HEVVWSVDGGSTGTSIS----SDG-VLTVAANETNQLT-------VKATVDIG 422 (449) T ss_pred eccceeeecCceEEEEEEEecCCCCC-ceEEEEEeCCceEEEEc----CCc-eEEEecCccEEEE-------EEEecCcE Confidence 33346778888888877764334443 233343334432 2211 111 1222222221111 1111111 Q ss_pred ----cEEEecccEEEEeechhhccCCCCchHH Q lcl|Aclame:pro 79 ----DRQTLGTGRLTILPDLAATNPVDARSHA 106 (176) Q Consensus 79 ----d~~~v~~G~i~IlPdla~~~~~D~RS~a 106 (176) ++...+.-.++|.|+-+..|+ +| T Consensus 423 TaT~tvtV~~~a~VtVtP~sa~gga-----qA 449 (449) T protein:vir:11 423 TADEPKPVVGEAVVNVRPDSSTGGA-----QA 449 (449) T ss_pred EEEEEeeecceEEEEEeecCCCCcc-----cC Confidence 122345556778888764332 22 No 8 >protein:vir:395 Length: 117 # NCBI annotation: gp10 # Family: family:all:1908 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046905;genbank:gi:9630475;genbank:GeneID:1261649 Probab=2.87 E-value=24 Score=13.05 Aligned_cols=84 Identities=19% Similarity=0.174 Sum_probs=41.9 Q ss_pred CCcCceeccCccE-EEEecCCCCCCCccceeeeEeecCcEEEEEEEeeCCeEEEEechhhccccccc-------ceEEEE Q lcl|Aclame:pro 1 MSEPIKLQAGDSI-TWSREAPGYPAEDGWSLHYALRGPAPIDLSTTGDGTVYKVSVSAADSAKWSAG-------DYVFSC 72 (176) Q Consensus 1 mt~P~~i~AGdsv-~w~~~l~~ypas~~wtL~y~lrg~~~idi~a~a~~~~~~v~~~as~Ta~w~~G-------~y~~~~ 72 (176) |.+|+.|+.|--+ .-.+...|.|++ +.| ..| ++.|. +..=.+++-.++.++-..| .-+|.. T Consensus 23 ~g~~a~i~~g~~~~rti~gVFDdP~~----~~~-~ag--gg~ie----~saP~LfvktaDv~gl~r~D~vtI~g~~y~V~ 91 (117) T protein:vir:39 23 MGTEAKVMSGTLSGATLVGVFDDPEN----IGY-AGA--GIRVE----GTSPTLFVKTSTVSQLQRMDTLTINGRQFWVD 91 (117) T ss_pred cCceEEEEeCCCCceEEEEEecCccc----ccc-ccC--ceEEe----ccCcEEEEeeccccccCCCCEEEECCCceEEe Confidence 9999999999543 334456666743 222 223 33333 2224455555555555443 233455 Q ss_pred EEE---CCCcEEEecccEEEEeechhhccCCCCchH Q lcl|Aclame:pro 73 FVV---KGEDRQTLGTGRLTILPDLAATNPVDARSH 105 (176) Q Consensus 73 ~vt---~g~d~~~v~~G~i~IlPdla~~~~~D~RS~ 105 (176) ++. .|.-++.+.+|+- +-.+|-+ T Consensus 92 ~~~pDg~G~~~l~L~rg~p----------p~~~~~~ 117 (117) T protein:vir:39 92 RVGPDDCGSCHIWLGNGTP----------PASSRRR 117 (117) T ss_pred eeccCCCceEEEEeecCCC----------CCccCCC Confidence 542 1222666666653 1133333 No 9 >protein:vir:741 Length: 110 # NCBI annotation: unknown # Family: family:all:372 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108718;genbank:gi:13487840;genbank:GeneID:920873 Probab=2.31 E-value=29 Score=12.55 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=37.9 Q ss_pred EEEeechhh-ccC-CC--------------------CchHHHHHHH-----HHHHHHhcccccceeeEEEcCeEEEEcC- Q lcl|Aclame:pro 88 LTILPDLAA-TNP-VD--------------------ARSHAKRMLD-----AIEATLEKRATRDQQSYEIEGRRLDRIP- 139 (176) Q Consensus 88 i~IlPdla~-~~~-~D--------------------~RS~a~~~Ld-----aIeA~ie~rat~d~~~Y~I~~R~L~r~~- 139 (176) ++|+-++-. .|- =| .++.-=..|+ -.-+.+-++..-|+.||+.+|.++.+.+ T Consensus 1 M~~L~~vK~~lgi~~D~lL~~li~~a~~~i~~~l~~~~~~iP~~l~~iv~evav~ryNR~g~EG~~S~SeeG~S~sf~~~ 80 (110) T protein:vir:74 1 MAITYEIKKLLGGSSDERLEIIEKRTRERLLLILGSDLKEVPPELEYVVLDVSLKRFNRIGQEGMQSYSQEGLSMTFSES 80 (110) T ss_pred ChHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHhcccCccccceeecCCeeeeeccc Confidence 666666542 221 01 1111111111 1112222334458999999999999954 Q ss_pred -HHHHHHHHHHHHHHHHHHHhhhccCCccCceEEEEeC Q lcl|Aclame:pro 140 -IPELLKLRDRYRREHQRELEQAGLRPRRQSFIRVSLS 176 (176) Q Consensus 140 -i~eLlklr~~y~~~varE~~~~g~~~~~~~~V~vrf~ 176 (176) ++|....-+.|+.. ..+.++ .+..+|||- T Consensus 81 d~~~y~~~l~~y~~~------~~~~~~--~~~~~~~f~ 110 (110) T protein:vir:74 81 DFDEYADEIESRRKS------KETEGD--KKIGRFRLY 110 (110) T ss_pred chhhHHHHHHHHHhh------cccccc--CcceeeeeC Confidence 33444444444421 111122 334677777 No 10 >protein:vir:96262 Length: 274 # NCBI annotation: ORF013 # Family: family:all:522 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240311;genbank:gi:66395978;genbank:GeneID:5133339 Probab=1.89 E-value=35 Score=12.07 Aligned_cols=79 Identities=13% Similarity=0.101 Sum_probs=44.4 Q ss_pred CCcCceeccCccEEEEecCCCCCCCccceeeeEeecCcEEEEEEEeeCCeEEEEechhhcccccccceEEEEEEECCCc- Q lcl|Aclame:pro 1 MSEPIKLQAGDSITWSREAPGYPAEDGWSLHYALRGPAPIDLSTTGDGTVYKVSVSAADSAKWSAGDYVFSCFVVKGED- 79 (176) Q Consensus 1 mt~P~~i~AGdsv~w~~~l~~ypas~~wtL~y~lrg~~~idi~a~a~~~~~~v~~~as~Ta~w~~G~y~~~~~vt~g~d- 79 (176) -.++. ..|..|.-...+|.|- .|++ |+..+-+-... +-.--..=.+..=+.+.-|++.|.+.+.+++- T Consensus 194 G~ig~--~~G~~Vi~s~~~~~~t-------~~l~-~~gA~~~~~~~-~~~vE~~Rd~~~~~d~i~~~~~y~~~~~~~~~~ 262 (274) T protein:vir:96 194 GAFGE--ALGAVIVRSNKLEAGT-------AILA-KKGAVKLITKR-DFFLETDRDPSTKTTALYSDKHYVAYLYDESKA 262 (274) T ss_pred cccce--ecCeEEEEeCCCCCce-------EEEE-eccceeeeecC-CcccccccccccccCEEEEeEEEEEEEEcCCcE Confidence 11222 4687887777666542 2443 33333221111 10000111122345677789999999999887 Q ss_pred -EEEecccEEEE Q lcl|Aclame:pro 80 -RQTLGTGRLTI 90 (176) Q Consensus 80 -~~~v~~G~i~I 90 (176) +++.++|.++. T Consensus 263 v~~tk~~~~~~~ 274 (274) T protein:vir:96 263 VKITKGSGSLEM 274 (274) T ss_pred EEEEcCCccccC Confidence 78889999998 Done!