Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phi-MhaA1-PHL101 | Genbank acc : NC_008201 | Aclame index mge :1484

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 9) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 49

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	4	lcl\|Aclame:protein:vir:100331\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	1	lcl\|Aclame:protein:vir:100328\|NCBI_annot:capsid	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:100329\|NCBI_annot:terminase	Blast (e-value=0)
MTP	25	lcl\|Aclame:protein:vir:100324\|NCBI_annot:tail	Blast (e-value=1e-96)
Sheath	24	lcl\|Aclame:protein:vir:100323\|NCBI_annot:tail	HHsearch (proba=100.00%)
Ad1	6	lcl\|Aclame:protein:vir:100333\|NCBI_annot:head	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	13	lcl\|Aclame:protein:vir:100312\|NCBI_annot:tail	HHsearch (proba=100.00%)
Tc1	12	lcl\|Aclame:protein:vir:100311\|NCBI_annot:tail	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Tc1<->Ad1	6	4
Ne1<->Ad1	7	4

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:100331 protein:vir:98566 protein:vir:2016	phi-MhaA1-PHL101 PSP3 P2	100 % 57 % 56 %
Portal	protein:vir:100328 protein:vir:79150 protein:vir:79207	phi-MhaA1-PHL101 RSA1 phiE202	100 % 55 % 53 %
TermL	protein:vir:100329 protein:vir:79128 protein:vir:6059	phi-MhaA1-PHL101 RSA1 WPhi	100 % 54 % 54 %
MTP	protein:vir:100324 protein:vir:79133 protein:vir:1846	phi-MhaA1-PHL101 RSA1 186	100 % 51 % 44 %
Sheath	protein:vir:100323 protein:vir:98553 protein:vir:1845	phi-MhaA1-PHL101 PSP3 186	100 % 46 % 46 %
Ad1	protein:vir:100333 protein:vir:79188 protein:vir:79124	phi-MhaA1-PHL101 phiE202 RSA1	100 % 42 % 40 %
Ne1	protein:vir:100312 protein:vir:1838 protein:vir:98557	phi-MhaA1-PHL101 186 PSP3	100 % 37 % 36 %
Tc1	protein:vir:100311 protein:vir:2025 protein:vir:6070	phi-MhaA1-PHL101 P2 WPhi	100 % 40 % 39 %