Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 315.5 | Genbank acc : NC_004588 | Aclame index mge :177

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 55

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	33	lcl\|Aclame:protein:vir:9875\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Portal	29	lcl\|Aclame:protein:vir:9871\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
TermL	28	lcl\|Aclame:protein:vir:9870\|NCBI_annot:putative	Blast (e-value=1e-163)
MTP	39	lcl\|Aclame:protein:vir:9881\|NCBI_annot:hypothetical	Blast (e-value=2e-96)
Sheath	NOT FOUND
Ad1	35	lcl\|Aclame:protein:vir:9877\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	36	lcl\|Aclame:protein:vir:9878\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	37	lcl\|Aclame:protein:vir:9879\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	38	lcl\|Aclame:protein:vir:9880\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:9875 protein:vir:106647 protein:vir:9927	315.5 187 315.6	97 % 37 % 34 %
Portal	protein:vir:9871 protein:vir:3964 protein:vir:733	315.5 ul36 Tuc2009	100 % 44 % 44 %
TermL	protein:vir:9870 protein:vir:96840 protein:vir:96147	315.5 EW 37	100 % 75 % 75 %
MTP	protein:vir:9881 protein:vir:101621 protein:vir:3973	315.5 11b ul36	100 % 25 % 21 %
Ad1	protein:vir:9877 protein:vir:95774 protein:vir:3615	315.5 SMP TP901-1	100 % 26 % 26 %
Hc1	protein:vir:9878 protein:vir:81177 protein:vir:4459	315.5 Geobacillus virus E2 ST64B	100 % 13 % 13 %
Ne1	protein:vir:9879 protein:vir:98409 protein:vir:743	315.5 ul36 Tuc2009	90 % 26 % 25 %
Tc1	protein:vir:9880 protein:vir:5979 protein:vir:2741	315.5 SPP1 O1205	100 % 20 % 18 %