Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : HK022 | Genbank acc : NC_002166 | Aclame index mge :41

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 57

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	5	lcl\|Aclame:protein:vir:1886\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:1884\|NCBI_annot:head	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:1883\|NCBI_annot:terminase	Blast (e-value=0)
MTP	12	lcl\|Aclame:protein:vir:1893\|NCBI_annot:major	Blast (e-value=9e-96)
Sheath	NOT FOUND
Ad1	6	lcl\|Aclame:protein:vir:1887\|NCBI_annot:gp6\|genbank:acc:NP_037667;genbank:gi:9634125;genbank:GeneID:1	HHsearch (proba=100.00%)
Hc1	9	lcl\|Aclame:protein:vir:1890\|NCBI_annot:gp9\|genbank:acc:NP_037670;genbank:gi:9634128;genbank:GeneID:1	HHsearch (proba=100.00%)
Ne1	10	lcl\|Aclame:protein:vir:1891\|NCBI_annot:gp10\|genbank:acc:NP_037671;genbank:gi:9634129;genbank:GeneID:	HHsearch (proba=100.00%)
Tc1	11	lcl\|Aclame:protein:vir:1892\|NCBI_annot:gp11\|genbank:acc:NP_037672;genbank:gi:9634130;genbank:GeneID:	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad1<->Hc1	3	2
Tc1<->Ad1	5	4
Ne1<->Ad1	4	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:1886 protein:vir:191 protein:vir:100135	HK022 HK97 phi1026b	100 % 100 % 41 %
Portal	protein:vir:1884 protein:vir:189 protein:vir:100150	HK022 HK97 phi1026b	100 % 98 % 33 %
TermL	protein:vir:1883 protein:vir:188 protein:vir:81178	HK022 HK97 Geobacillus virus E2	100 % 99 % 28 %
MTP	protein:vir:1893 protein:vir:4349 protein:vir:100241	HK022 D3 Bcep176	100 % 65 % 23 %
Ad1	protein:vir:1887 protein:vir:192 protein:vir:4512	HK022 HK97 V	100 % 100 % 22 %
Hc1	protein:vir:1890 protein:vir:4343 protein:vir:81177	HK022 D3 Geobacillus virus E2	100 % 40 % 34 %
Ne1	protein:vir:1891 protein:vir:4347 protein:vir:80362	HK022 D3 phi644-2	100 % 44 % 31 %
Tc1	protein:vir:1892 protein:vir:4348 protein:vir:93602	HK022 D3 phi 4795	100 % 58 % 24 %